data: upload croissant.json
Browse files- croissant.json +771 -0
croissant.json
ADDED
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@@ -0,0 +1,771 @@
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| 1 |
+
{
|
| 2 |
+
"@context": {
|
| 3 |
+
"@vocab": "https://schema.org/",
|
| 4 |
+
"sc": "https://schema.org/",
|
| 5 |
+
"ml": "http://mlcommons.org/croissant/",
|
| 6 |
+
"rai": "http://mlcommons.org/croissant/RAI/",
|
| 7 |
+
"prov": "http://www.w3.org/ns/prov#",
|
| 8 |
+
"cr": "http://mlcommons.org/croissant/",
|
| 9 |
+
"dct": "http://purl.org/dc/terms/",
|
| 10 |
+
"conformsTo": "dct:conformsTo",
|
| 11 |
+
"recordSet": "cr:recordSet",
|
| 12 |
+
"field": "cr:field",
|
| 13 |
+
"dataType": "cr:dataType",
|
| 14 |
+
"source": "cr:source",
|
| 15 |
+
"fileObject": "cr:fileObject",
|
| 16 |
+
"fileSet": "cr:fileSet",
|
| 17 |
+
"extract": "cr:extract",
|
| 18 |
+
"column": "cr:column",
|
| 19 |
+
"containedIn": "cr:containedIn",
|
| 20 |
+
"includes": "cr:includes",
|
| 21 |
+
"isLiveDataset": "cr:isLiveDataset",
|
| 22 |
+
"key": "cr:key"
|
| 23 |
+
},
|
| 24 |
+
"@type": "sc:Dataset",
|
| 25 |
+
"name": "AET-Bench",
|
| 26 |
+
"description": "AET-Bench: A Comprehensive Benchmark for Atomic Electron Tomography Reconstruction. 755 samples across 6 data tiers (analytical simulation, binary alloys, 4D dynamics, multislice, real experimental from published studies, Brownian Pt nanocrystals), 14 primary reconstruction methods from 5 algorithmic families (plus supplementary baselines), 4 evaluation tasks, and 14,000+ result rows.",
|
| 27 |
+
"license": "https://creativecommons.org/licenses/by/4.0/",
|
| 28 |
+
"url": "https://huggingface.co/datasets/pone7/4D-ATE",
|
| 29 |
+
"conformsTo": "http://mlcommons.org/croissant/1.0",
|
| 30 |
+
"version": "1.0.0",
|
| 31 |
+
"datePublished": "2026-04-10",
|
| 32 |
+
"creator": {
|
| 33 |
+
"@type": "sc:Organization",
|
| 34 |
+
"name": "Anonymous (under review)"
|
| 35 |
+
},
|
| 36 |
+
"keywords": [
|
| 37 |
+
"atomic electron tomography",
|
| 38 |
+
"HAADF-STEM",
|
| 39 |
+
"3D reconstruction",
|
| 40 |
+
"4D dynamic imaging",
|
| 41 |
+
"Gaussian splatting",
|
| 42 |
+
"benchmark",
|
| 43 |
+
"nanoparticle",
|
| 44 |
+
"materials science"
|
| 45 |
+
],
|
| 46 |
+
"distribution": [
|
| 47 |
+
{
|
| 48 |
+
"@type": "cr:FileObject",
|
| 49 |
+
"@id": "aet-bench-samples.csv",
|
| 50 |
+
"name": "aet-bench-samples.csv",
|
| 51 |
+
"description": "One row per released AET-Bench sample, including paths to sample metadata, NAF pickle data, and atom coordinates.",
|
| 52 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-samples.csv",
|
| 53 |
+
"encodingFormat": "text/csv",
|
| 54 |
+
"contentSize": "260124 B",
|
| 55 |
+
"sha256": "cf28c95685743acf1272a098f7bc73f295c7c4bb8afea7d45e266411ac89ee7f"
|
| 56 |
+
},
|
| 57 |
+
{
|
| 58 |
+
"@type": "cr:FileObject",
|
| 59 |
+
"@id": "aet-bench-results.csv",
|
| 60 |
+
"name": "aet-bench-results.csv",
|
| 61 |
+
"description": "Columnar view of the benchmark result log for Croissant validators and reviewer inspection.",
|
| 62 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-results.csv",
|
| 63 |
+
"encodingFormat": "text/csv",
|
| 64 |
+
"contentSize": "937719 B",
|
| 65 |
+
"sha256": "b147cc1fb4ff3e278c8232392a9042cb133d3cdb431fa2198afecce4a8eda0c1"
|
| 66 |
+
},
|
| 67 |
+
{
|
| 68 |
+
"@type": "cr:FileObject",
|
| 69 |
+
"@id": "results.jsonl",
|
| 70 |
+
"name": "results.jsonl",
|
| 71 |
+
"description": "Canonical benchmark result log used by paper table and figure generation.",
|
| 72 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/results.jsonl",
|
| 73 |
+
"encodingFormat": "application/jsonlines",
|
| 74 |
+
"contentSize": "26055448 B",
|
| 75 |
+
"sha256": "399875278020a7fcc9d66847b4586d998e61eeff8c473cca55c8acb3d326bef4"
|
| 76 |
+
},
|
| 77 |
+
{
|
| 78 |
+
"@type": "cr:FileObject",
|
| 79 |
+
"@id": "aet-bench-mono.tar.part-000",
|
| 80 |
+
"name": "aet-bench-mono.tar.part-000",
|
| 81 |
+
"description": "Part 1 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
|
| 82 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-000",
|
| 83 |
+
"encodingFormat": "application/octet-stream",
|
| 84 |
+
"contentSize": "8589934592 B",
|
| 85 |
+
"sha256": "30a5a4eaca7a8bd0d28db34cc837222f600d5f5773f57d312860a05aaa314e9f"
|
| 86 |
+
},
|
| 87 |
+
{
|
| 88 |
+
"@type": "cr:FileObject",
|
| 89 |
+
"@id": "aet-bench-mono.tar.part-001",
|
| 90 |
+
"name": "aet-bench-mono.tar.part-001",
|
| 91 |
+
"description": "Part 2 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
|
| 92 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-001",
|
| 93 |
+
"encodingFormat": "application/octet-stream",
|
| 94 |
+
"contentSize": "8589934592 B",
|
| 95 |
+
"sha256": "c9b09f2e34fbb0ffcd4a72ed34ca8011bff831643812122b0228782f13a8f893"
|
| 96 |
+
},
|
| 97 |
+
{
|
| 98 |
+
"@type": "cr:FileObject",
|
| 99 |
+
"@id": "aet-bench-mono.tar.part-002",
|
| 100 |
+
"name": "aet-bench-mono.tar.part-002",
|
| 101 |
+
"description": "Part 3 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
|
| 102 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-002",
|
| 103 |
+
"encodingFormat": "application/octet-stream",
|
| 104 |
+
"contentSize": "8589934592 B",
|
| 105 |
+
"sha256": "d6919ee3264ae531f3d03409b58699ed3d36ecf7cb842cc44e926925cfd32cf6"
|
| 106 |
+
},
|
| 107 |
+
{
|
| 108 |
+
"@type": "cr:FileObject",
|
| 109 |
+
"@id": "aet-bench-mono.tar.part-003",
|
| 110 |
+
"name": "aet-bench-mono.tar.part-003",
|
| 111 |
+
"description": "Part 4 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
|
| 112 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-003",
|
| 113 |
+
"encodingFormat": "application/octet-stream",
|
| 114 |
+
"contentSize": "8589934592 B",
|
| 115 |
+
"sha256": "1679247e483d4e5e0cab6fd7156f1c151419d8ac4aaa352159d7e78541da66d8"
|
| 116 |
+
},
|
| 117 |
+
{
|
| 118 |
+
"@type": "cr:FileObject",
|
| 119 |
+
"@id": "aet-bench-mono.tar.part-004",
|
| 120 |
+
"name": "aet-bench-mono.tar.part-004",
|
| 121 |
+
"description": "Part 5 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
|
| 122 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-004",
|
| 123 |
+
"encodingFormat": "application/octet-stream",
|
| 124 |
+
"contentSize": "1949233152 B",
|
| 125 |
+
"sha256": "c36f7a8f2817b4220abd4d8214cd0374c207f698db67fcd0e9a6c66abbabcaf2"
|
| 126 |
+
},
|
| 127 |
+
{
|
| 128 |
+
"@type": "cr:FileSet",
|
| 129 |
+
"@id": "mono-files",
|
| 130 |
+
"name": "mono tier files",
|
| 131 |
+
"containedIn": [
|
| 132 |
+
{
|
| 133 |
+
"@id": "aet-bench-mono.tar.part-000"
|
| 134 |
+
},
|
| 135 |
+
{
|
| 136 |
+
"@id": "aet-bench-mono.tar.part-001"
|
| 137 |
+
},
|
| 138 |
+
{
|
| 139 |
+
"@id": "aet-bench-mono.tar.part-002"
|
| 140 |
+
},
|
| 141 |
+
{
|
| 142 |
+
"@id": "aet-bench-mono.tar.part-003"
|
| 143 |
+
},
|
| 144 |
+
{
|
| 145 |
+
"@id": "aet-bench-mono.tar.part-004"
|
| 146 |
+
}
|
| 147 |
+
],
|
| 148 |
+
"encodingFormat": "application/octet-stream",
|
| 149 |
+
"includes": "data/aet_bench/mono/**/*",
|
| 150 |
+
"description": "Files contained in the reconstructed aet-bench-mono.tar archive. Concatenate the listed parts before extracting."
|
| 151 |
+
},
|
| 152 |
+
{
|
| 153 |
+
"@type": "cr:FileObject",
|
| 154 |
+
"@id": "aet-bench-bi.tar.part-000",
|
| 155 |
+
"name": "aet-bench-bi.tar.part-000",
|
| 156 |
+
"description": "Part 1 of 3 for aet-bench-bi.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 6661b6b85c267e28010d479e854a95a84cf5bab8dde45cc0ed6a247b7a85b3e2.",
|
| 157 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-bi.tar.part-000",
|
| 158 |
+
"encodingFormat": "application/octet-stream",
|
| 159 |
+
"contentSize": "8589934592 B",
|
| 160 |
+
"sha256": "40ce4a10dc709d60abb1f1d48d5ad4faa5f0a00141623d4e8d4f450d4f7417d7"
|
| 161 |
+
},
|
| 162 |
+
{
|
| 163 |
+
"@type": "cr:FileObject",
|
| 164 |
+
"@id": "aet-bench-bi.tar.part-001",
|
| 165 |
+
"name": "aet-bench-bi.tar.part-001",
|
| 166 |
+
"description": "Part 2 of 3 for aet-bench-bi.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 6661b6b85c267e28010d479e854a95a84cf5bab8dde45cc0ed6a247b7a85b3e2.",
|
| 167 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-bi.tar.part-001",
|
| 168 |
+
"encodingFormat": "application/octet-stream",
|
| 169 |
+
"contentSize": "8589934592 B",
|
| 170 |
+
"sha256": "fe38c030d152d16d8a84bca7da408bf9bf65f6c2b42ca858a27a8284030f79b9"
|
| 171 |
+
},
|
| 172 |
+
{
|
| 173 |
+
"@type": "cr:FileObject",
|
| 174 |
+
"@id": "aet-bench-bi.tar.part-002",
|
| 175 |
+
"name": "aet-bench-bi.tar.part-002",
|
| 176 |
+
"description": "Part 3 of 3 for aet-bench-bi.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 6661b6b85c267e28010d479e854a95a84cf5bab8dde45cc0ed6a247b7a85b3e2.",
|
| 177 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-bi.tar.part-002",
|
| 178 |
+
"encodingFormat": "application/octet-stream",
|
| 179 |
+
"contentSize": "4075012096 B",
|
| 180 |
+
"sha256": "a9068c1d6a7627f1398d0a24c7b4e16e491ade92ad7c27edf3e4c16ab940ee09"
|
| 181 |
+
},
|
| 182 |
+
{
|
| 183 |
+
"@type": "cr:FileSet",
|
| 184 |
+
"@id": "bi-files",
|
| 185 |
+
"name": "bi tier files",
|
| 186 |
+
"containedIn": [
|
| 187 |
+
{
|
| 188 |
+
"@id": "aet-bench-bi.tar.part-000"
|
| 189 |
+
},
|
| 190 |
+
{
|
| 191 |
+
"@id": "aet-bench-bi.tar.part-001"
|
| 192 |
+
},
|
| 193 |
+
{
|
| 194 |
+
"@id": "aet-bench-bi.tar.part-002"
|
| 195 |
+
}
|
| 196 |
+
],
|
| 197 |
+
"encodingFormat": "application/octet-stream",
|
| 198 |
+
"includes": "data/aet_bench/bi/**/*",
|
| 199 |
+
"description": "Files contained in the reconstructed aet-bench-bi.tar archive. Concatenate the listed parts before extracting."
|
| 200 |
+
},
|
| 201 |
+
{
|
| 202 |
+
"@type": "cr:FileObject",
|
| 203 |
+
"@id": "aet-bench-sim4d.tar",
|
| 204 |
+
"name": "aet-bench-sim4d.tar",
|
| 205 |
+
"description": "AET-Bench sim4d tier archive.",
|
| 206 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-sim4d.tar",
|
| 207 |
+
"encodingFormat": "application/x-tar",
|
| 208 |
+
"contentSize": "885698560 B",
|
| 209 |
+
"sha256": "7b9bac6e5dcf3e4936739fa045a65bc572b40f00f476a7848918096bdd981a69"
|
| 210 |
+
},
|
| 211 |
+
{
|
| 212 |
+
"@type": "cr:FileSet",
|
| 213 |
+
"@id": "sim4d-files",
|
| 214 |
+
"name": "sim4d tier files",
|
| 215 |
+
"containedIn": {
|
| 216 |
+
"@id": "aet-bench-sim4d.tar"
|
| 217 |
+
},
|
| 218 |
+
"encodingFormat": "application/octet-stream",
|
| 219 |
+
"includes": "data/aet_bench/sim4d/**/*"
|
| 220 |
+
},
|
| 221 |
+
{
|
| 222 |
+
"@type": "cr:FileObject",
|
| 223 |
+
"@id": "aet-bench-multislice.tar",
|
| 224 |
+
"name": "aet-bench-multislice.tar",
|
| 225 |
+
"description": "AET-Bench multislice tier archive.",
|
| 226 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-multislice.tar",
|
| 227 |
+
"encodingFormat": "application/x-tar",
|
| 228 |
+
"contentSize": "264232960 B",
|
| 229 |
+
"sha256": "607f547505f4c6a4ae32899be088107a41918728544b224897be81bde9c528fa"
|
| 230 |
+
},
|
| 231 |
+
{
|
| 232 |
+
"@type": "cr:FileSet",
|
| 233 |
+
"@id": "multislice-files",
|
| 234 |
+
"name": "multislice tier files",
|
| 235 |
+
"containedIn": {
|
| 236 |
+
"@id": "aet-bench-multislice.tar"
|
| 237 |
+
},
|
| 238 |
+
"encodingFormat": "application/octet-stream",
|
| 239 |
+
"includes": "data/aet_bench/multislice/**/*"
|
| 240 |
+
},
|
| 241 |
+
{
|
| 242 |
+
"@type": "cr:FileObject",
|
| 243 |
+
"@id": "aet-bench-real.tar.part-000",
|
| 244 |
+
"name": "aet-bench-real.tar.part-000",
|
| 245 |
+
"description": "Part 1 of 2 for aet-bench-real.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 7e433949b0c53d739b594bf724d4505e7e348b7ca1113e0838da630ae242e43d.",
|
| 246 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-real.tar.part-000",
|
| 247 |
+
"encodingFormat": "application/octet-stream",
|
| 248 |
+
"contentSize": "8589934592 B",
|
| 249 |
+
"sha256": "edca645c96ef5fd2005074f22eaa3c79e5f7fac29a9b344b2fb084c60a37b58a"
|
| 250 |
+
},
|
| 251 |
+
{
|
| 252 |
+
"@type": "cr:FileObject",
|
| 253 |
+
"@id": "aet-bench-real.tar.part-001",
|
| 254 |
+
"name": "aet-bench-real.tar.part-001",
|
| 255 |
+
"description": "Part 2 of 2 for aet-bench-real.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 7e433949b0c53d739b594bf724d4505e7e348b7ca1113e0838da630ae242e43d.",
|
| 256 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-real.tar.part-001",
|
| 257 |
+
"encodingFormat": "application/octet-stream",
|
| 258 |
+
"contentSize": "2051053568 B",
|
| 259 |
+
"sha256": "cf13be71439e28098ead39894a63376f0683bce1e65a3ee6026f40aa9bf15a4e"
|
| 260 |
+
},
|
| 261 |
+
{
|
| 262 |
+
"@type": "cr:FileSet",
|
| 263 |
+
"@id": "real-files",
|
| 264 |
+
"name": "real tier files",
|
| 265 |
+
"containedIn": [
|
| 266 |
+
{
|
| 267 |
+
"@id": "aet-bench-real.tar.part-000"
|
| 268 |
+
},
|
| 269 |
+
{
|
| 270 |
+
"@id": "aet-bench-real.tar.part-001"
|
| 271 |
+
}
|
| 272 |
+
],
|
| 273 |
+
"encodingFormat": "application/octet-stream",
|
| 274 |
+
"includes": "data/aet_bench/real/**/*",
|
| 275 |
+
"description": "Files contained in the reconstructed aet-bench-real.tar archive. Concatenate the listed parts before extracting."
|
| 276 |
+
},
|
| 277 |
+
{
|
| 278 |
+
"@type": "cr:FileObject",
|
| 279 |
+
"@id": "aet-bench-brownian_pt.tar",
|
| 280 |
+
"name": "aet-bench-brownian_pt.tar",
|
| 281 |
+
"description": "AET-Bench brownian_pt tier archive.",
|
| 282 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-brownian_pt.tar",
|
| 283 |
+
"encodingFormat": "application/x-tar",
|
| 284 |
+
"contentSize": "5796802560 B",
|
| 285 |
+
"sha256": "1ddd636ccc8228e7395953848dc831ced42d61e5e27d47e836b1fe62357e305e"
|
| 286 |
+
},
|
| 287 |
+
{
|
| 288 |
+
"@type": "cr:FileSet",
|
| 289 |
+
"@id": "brownian_pt-files",
|
| 290 |
+
"name": "brownian_pt tier files",
|
| 291 |
+
"containedIn": {
|
| 292 |
+
"@id": "aet-bench-brownian_pt.tar"
|
| 293 |
+
},
|
| 294 |
+
"encodingFormat": "application/octet-stream",
|
| 295 |
+
"includes": "data/aet_bench/brownian_pt/**/*"
|
| 296 |
+
},
|
| 297 |
+
{
|
| 298 |
+
"@type": "cr:FileObject",
|
| 299 |
+
"@id": "ORIGINAL_ARCHIVE_SHA256SUMS",
|
| 300 |
+
"name": "ORIGINAL_ARCHIVE_SHA256SUMS",
|
| 301 |
+
"description": "AET-Bench release metadata file ORIGINAL_ARCHIVE_SHA256SUMS.",
|
| 302 |
+
"contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/ORIGINAL_ARCHIVE_SHA256SUMS",
|
| 303 |
+
"encodingFormat": "text/plain",
|
| 304 |
+
"contentSize": "522 B",
|
| 305 |
+
"sha256": "b28c26c4ab58b1ddb7670d8d95c965fdbde83ee7d6099a9dd40fa8df7c7574e8"
|
| 306 |
+
}
|
| 307 |
+
],
|
| 308 |
+
"recordSet": [
|
| 309 |
+
{
|
| 310 |
+
"@type": "cr:RecordSet",
|
| 311 |
+
"@id": "samples",
|
| 312 |
+
"name": "samples",
|
| 313 |
+
"description": "One row per released AET-Bench sample.",
|
| 314 |
+
"key": {
|
| 315 |
+
"@id": "samples/sample_id"
|
| 316 |
+
},
|
| 317 |
+
"field": [
|
| 318 |
+
{
|
| 319 |
+
"@type": "cr:Field",
|
| 320 |
+
"@id": "samples/sample_id",
|
| 321 |
+
"name": "sample_id",
|
| 322 |
+
"dataType": "sc:Text",
|
| 323 |
+
"source": {
|
| 324 |
+
"fileObject": {
|
| 325 |
+
"@id": "aet-bench-samples.csv"
|
| 326 |
+
},
|
| 327 |
+
"extract": {
|
| 328 |
+
"column": "sample_id"
|
| 329 |
+
}
|
| 330 |
+
},
|
| 331 |
+
"description": "Unique sample identifier."
|
| 332 |
+
},
|
| 333 |
+
{
|
| 334 |
+
"@type": "cr:Field",
|
| 335 |
+
"@id": "samples/subset",
|
| 336 |
+
"name": "subset",
|
| 337 |
+
"dataType": "sc:Text",
|
| 338 |
+
"source": {
|
| 339 |
+
"fileObject": {
|
| 340 |
+
"@id": "aet-bench-samples.csv"
|
| 341 |
+
},
|
| 342 |
+
"extract": {
|
| 343 |
+
"column": "subset"
|
| 344 |
+
}
|
| 345 |
+
},
|
| 346 |
+
"description": "Data tier."
|
| 347 |
+
},
|
| 348 |
+
{
|
| 349 |
+
"@type": "cr:Field",
|
| 350 |
+
"@id": "samples/element",
|
| 351 |
+
"name": "element",
|
| 352 |
+
"dataType": "sc:Text",
|
| 353 |
+
"source": {
|
| 354 |
+
"fileObject": {
|
| 355 |
+
"@id": "aet-bench-samples.csv"
|
| 356 |
+
},
|
| 357 |
+
"extract": {
|
| 358 |
+
"column": "element"
|
| 359 |
+
}
|
| 360 |
+
},
|
| 361 |
+
"description": "Chemical element or element system."
|
| 362 |
+
},
|
| 363 |
+
{
|
| 364 |
+
"@type": "cr:Field",
|
| 365 |
+
"@id": "samples/n_atoms",
|
| 366 |
+
"name": "n_atoms",
|
| 367 |
+
"dataType": "sc:Integer",
|
| 368 |
+
"source": {
|
| 369 |
+
"fileObject": {
|
| 370 |
+
"@id": "aet-bench-samples.csv"
|
| 371 |
+
},
|
| 372 |
+
"extract": {
|
| 373 |
+
"column": "n_atoms"
|
| 374 |
+
}
|
| 375 |
+
},
|
| 376 |
+
"description": "Number of reference atoms, if available."
|
| 377 |
+
},
|
| 378 |
+
{
|
| 379 |
+
"@type": "cr:Field",
|
| 380 |
+
"@id": "samples/n_angles",
|
| 381 |
+
"name": "n_angles",
|
| 382 |
+
"dataType": "sc:Integer",
|
| 383 |
+
"source": {
|
| 384 |
+
"fileObject": {
|
| 385 |
+
"@id": "aet-bench-samples.csv"
|
| 386 |
+
},
|
| 387 |
+
"extract": {
|
| 388 |
+
"column": "n_angles"
|
| 389 |
+
}
|
| 390 |
+
},
|
| 391 |
+
"description": "Number of projection angles."
|
| 392 |
+
},
|
| 393 |
+
{
|
| 394 |
+
"@type": "cr:Field",
|
| 395 |
+
"@id": "samples/has_atom_gt",
|
| 396 |
+
"name": "has_atom_gt",
|
| 397 |
+
"dataType": "sc:Boolean",
|
| 398 |
+
"source": {
|
| 399 |
+
"fileObject": {
|
| 400 |
+
"@id": "aet-bench-samples.csv"
|
| 401 |
+
},
|
| 402 |
+
"extract": {
|
| 403 |
+
"column": "has_atom_gt"
|
| 404 |
+
}
|
| 405 |
+
},
|
| 406 |
+
"description": "Whether atom-level reference coordinates are included."
|
| 407 |
+
},
|
| 408 |
+
{
|
| 409 |
+
"@type": "cr:Field",
|
| 410 |
+
"@id": "samples/metadata_path",
|
| 411 |
+
"name": "metadata_path",
|
| 412 |
+
"dataType": "sc:Text",
|
| 413 |
+
"source": {
|
| 414 |
+
"fileObject": {
|
| 415 |
+
"@id": "aet-bench-samples.csv"
|
| 416 |
+
},
|
| 417 |
+
"extract": {
|
| 418 |
+
"column": "metadata_path"
|
| 419 |
+
}
|
| 420 |
+
},
|
| 421 |
+
"description": "Path to per-sample metadata JSON inside the release archives."
|
| 422 |
+
},
|
| 423 |
+
{
|
| 424 |
+
"@type": "cr:Field",
|
| 425 |
+
"@id": "samples/data_pickle_path",
|
| 426 |
+
"name": "data_pickle_path",
|
| 427 |
+
"dataType": "sc:Text",
|
| 428 |
+
"source": {
|
| 429 |
+
"fileObject": {
|
| 430 |
+
"@id": "aet-bench-samples.csv"
|
| 431 |
+
},
|
| 432 |
+
"extract": {
|
| 433 |
+
"column": "data_pickle_path"
|
| 434 |
+
}
|
| 435 |
+
},
|
| 436 |
+
"description": "Path to the NAF-format pickle inside the release archives."
|
| 437 |
+
},
|
| 438 |
+
{
|
| 439 |
+
"@type": "cr:Field",
|
| 440 |
+
"@id": "samples/atoms_gt_path",
|
| 441 |
+
"name": "atoms_gt_path",
|
| 442 |
+
"dataType": "sc:Text",
|
| 443 |
+
"source": {
|
| 444 |
+
"fileObject": {
|
| 445 |
+
"@id": "aet-bench-samples.csv"
|
| 446 |
+
},
|
| 447 |
+
"extract": {
|
| 448 |
+
"column": "atoms_gt_path"
|
| 449 |
+
}
|
| 450 |
+
},
|
| 451 |
+
"description": "Path to atom-coordinate NumPy file, if available."
|
| 452 |
+
},
|
| 453 |
+
{
|
| 454 |
+
"@type": "cr:Field",
|
| 455 |
+
"@id": "samples/atoms_gt_4d_path",
|
| 456 |
+
"name": "atoms_gt_4d_path",
|
| 457 |
+
"dataType": "sc:Text",
|
| 458 |
+
"source": {
|
| 459 |
+
"fileObject": {
|
| 460 |
+
"@id": "aet-bench-samples.csv"
|
| 461 |
+
},
|
| 462 |
+
"extract": {
|
| 463 |
+
"column": "atoms_gt_4d_path"
|
| 464 |
+
}
|
| 465 |
+
},
|
| 466 |
+
"description": "Path to 4D atom-coordinate NumPy file, if available."
|
| 467 |
+
},
|
| 468 |
+
{
|
| 469 |
+
"@type": "cr:Field",
|
| 470 |
+
"@id": "samples/tier_archive",
|
| 471 |
+
"name": "tier_archive",
|
| 472 |
+
"dataType": "sc:Text",
|
| 473 |
+
"source": {
|
| 474 |
+
"fileObject": {
|
| 475 |
+
"@id": "aet-bench-samples.csv"
|
| 476 |
+
},
|
| 477 |
+
"extract": {
|
| 478 |
+
"column": "tier_archive"
|
| 479 |
+
}
|
| 480 |
+
},
|
| 481 |
+
"description": "Archive containing the sample files."
|
| 482 |
+
},
|
| 483 |
+
{
|
| 484 |
+
"@type": "cr:Field",
|
| 485 |
+
"@id": "samples/archive_member_prefix",
|
| 486 |
+
"name": "archive_member_prefix",
|
| 487 |
+
"dataType": "sc:Text",
|
| 488 |
+
"source": {
|
| 489 |
+
"fileObject": {
|
| 490 |
+
"@id": "aet-bench-samples.csv"
|
| 491 |
+
},
|
| 492 |
+
"extract": {
|
| 493 |
+
"column": "archive_member_prefix"
|
| 494 |
+
}
|
| 495 |
+
},
|
| 496 |
+
"description": "Directory prefix for the sample inside the tier archive."
|
| 497 |
+
},
|
| 498 |
+
{
|
| 499 |
+
"@type": "cr:Field",
|
| 500 |
+
"@id": "samples/source",
|
| 501 |
+
"name": "source",
|
| 502 |
+
"dataType": "sc:Text",
|
| 503 |
+
"source": {
|
| 504 |
+
"fileObject": {
|
| 505 |
+
"@id": "aet-bench-samples.csv"
|
| 506 |
+
},
|
| 507 |
+
"extract": {
|
| 508 |
+
"column": "source"
|
| 509 |
+
}
|
| 510 |
+
},
|
| 511 |
+
"description": "Original source for real-data samples when applicable."
|
| 512 |
+
}
|
| 513 |
+
]
|
| 514 |
+
},
|
| 515 |
+
{
|
| 516 |
+
"@type": "cr:RecordSet",
|
| 517 |
+
"@id": "results",
|
| 518 |
+
"name": "results",
|
| 519 |
+
"description": "Benchmark evaluation results.",
|
| 520 |
+
"key": {
|
| 521 |
+
"@id": "results/result_row_id"
|
| 522 |
+
},
|
| 523 |
+
"field": [
|
| 524 |
+
{
|
| 525 |
+
"@type": "cr:Field",
|
| 526 |
+
"@id": "results/result_row_id",
|
| 527 |
+
"name": "result_row_id",
|
| 528 |
+
"dataType": "sc:Integer",
|
| 529 |
+
"source": {
|
| 530 |
+
"fileObject": {
|
| 531 |
+
"@id": "aet-bench-results.csv"
|
| 532 |
+
},
|
| 533 |
+
"extract": {
|
| 534 |
+
"column": "result_row_id"
|
| 535 |
+
}
|
| 536 |
+
},
|
| 537 |
+
"description": "Stable row number in the release CSV."
|
| 538 |
+
},
|
| 539 |
+
{
|
| 540 |
+
"@type": "cr:Field",
|
| 541 |
+
"@id": "results/sample_id",
|
| 542 |
+
"name": "sample_id",
|
| 543 |
+
"dataType": "sc:Text",
|
| 544 |
+
"source": {
|
| 545 |
+
"fileObject": {
|
| 546 |
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"@id": "aet-bench-results.csv"
|
| 547 |
+
},
|
| 548 |
+
"extract": {
|
| 549 |
+
"column": "sample_id"
|
| 550 |
+
}
|
| 551 |
+
}
|
| 552 |
+
},
|
| 553 |
+
{
|
| 554 |
+
"@type": "cr:Field",
|
| 555 |
+
"@id": "results/subset",
|
| 556 |
+
"name": "subset",
|
| 557 |
+
"dataType": "sc:Text",
|
| 558 |
+
"source": {
|
| 559 |
+
"fileObject": {
|
| 560 |
+
"@id": "aet-bench-results.csv"
|
| 561 |
+
},
|
| 562 |
+
"extract": {
|
| 563 |
+
"column": "subset"
|
| 564 |
+
}
|
| 565 |
+
}
|
| 566 |
+
},
|
| 567 |
+
{
|
| 568 |
+
"@type": "cr:Field",
|
| 569 |
+
"@id": "results/method",
|
| 570 |
+
"name": "method",
|
| 571 |
+
"dataType": "sc:Text",
|
| 572 |
+
"source": {
|
| 573 |
+
"fileObject": {
|
| 574 |
+
"@id": "aet-bench-results.csv"
|
| 575 |
+
},
|
| 576 |
+
"extract": {
|
| 577 |
+
"column": "method"
|
| 578 |
+
}
|
| 579 |
+
},
|
| 580 |
+
"description": "Reconstruction method identifier."
|
| 581 |
+
},
|
| 582 |
+
{
|
| 583 |
+
"@type": "cr:Field",
|
| 584 |
+
"@id": "results/task",
|
| 585 |
+
"name": "task",
|
| 586 |
+
"dataType": "sc:Text",
|
| 587 |
+
"source": {
|
| 588 |
+
"fileObject": {
|
| 589 |
+
"@id": "aet-bench-results.csv"
|
| 590 |
+
},
|
| 591 |
+
"extract": {
|
| 592 |
+
"column": "task"
|
| 593 |
+
}
|
| 594 |
+
},
|
| 595 |
+
"description": "Evaluation task identifier."
|
| 596 |
+
},
|
| 597 |
+
{
|
| 598 |
+
"@type": "cr:Field",
|
| 599 |
+
"@id": "results/vol_psnr",
|
| 600 |
+
"name": "vol_psnr",
|
| 601 |
+
"dataType": "sc:Float",
|
| 602 |
+
"source": {
|
| 603 |
+
"fileObject": {
|
| 604 |
+
"@id": "aet-bench-results.csv"
|
| 605 |
+
},
|
| 606 |
+
"extract": {
|
| 607 |
+
"column": "vol_psnr"
|
| 608 |
+
}
|
| 609 |
+
},
|
| 610 |
+
"description": "Peak signal-to-noise ratio."
|
| 611 |
+
},
|
| 612 |
+
{
|
| 613 |
+
"@type": "cr:Field",
|
| 614 |
+
"@id": "results/vol_ssim",
|
| 615 |
+
"name": "vol_ssim",
|
| 616 |
+
"dataType": "sc:Float",
|
| 617 |
+
"source": {
|
| 618 |
+
"fileObject": {
|
| 619 |
+
"@id": "aet-bench-results.csv"
|
| 620 |
+
},
|
| 621 |
+
"extract": {
|
| 622 |
+
"column": "vol_ssim"
|
| 623 |
+
}
|
| 624 |
+
},
|
| 625 |
+
"description": "Structural similarity index."
|
| 626 |
+
},
|
| 627 |
+
{
|
| 628 |
+
"@type": "cr:Field",
|
| 629 |
+
"@id": "results/fsc_0.143_angstrom",
|
| 630 |
+
"name": "fsc_0.143_angstrom",
|
| 631 |
+
"dataType": "sc:Float",
|
| 632 |
+
"source": {
|
| 633 |
+
"fileObject": {
|
| 634 |
+
"@id": "aet-bench-results.csv"
|
| 635 |
+
},
|
| 636 |
+
"extract": {
|
| 637 |
+
"column": "fsc_0.143_angstrom"
|
| 638 |
+
}
|
| 639 |
+
},
|
| 640 |
+
"description": "Fourier shell correlation resolution at threshold 0.143."
|
| 641 |
+
},
|
| 642 |
+
{
|
| 643 |
+
"@type": "cr:Field",
|
| 644 |
+
"@id": "results/recall",
|
| 645 |
+
"name": "recall",
|
| 646 |
+
"dataType": "sc:Float",
|
| 647 |
+
"source": {
|
| 648 |
+
"fileObject": {
|
| 649 |
+
"@id": "aet-bench-results.csv"
|
| 650 |
+
},
|
| 651 |
+
"extract": {
|
| 652 |
+
"column": "recall"
|
| 653 |
+
}
|
| 654 |
+
},
|
| 655 |
+
"description": "Atom localization recall."
|
| 656 |
+
},
|
| 657 |
+
{
|
| 658 |
+
"@type": "cr:Field",
|
| 659 |
+
"@id": "results/precision",
|
| 660 |
+
"name": "precision",
|
| 661 |
+
"dataType": "sc:Float",
|
| 662 |
+
"source": {
|
| 663 |
+
"fileObject": {
|
| 664 |
+
"@id": "aet-bench-results.csv"
|
| 665 |
+
},
|
| 666 |
+
"extract": {
|
| 667 |
+
"column": "precision"
|
| 668 |
+
}
|
| 669 |
+
},
|
| 670 |
+
"description": "Atom localization precision."
|
| 671 |
+
},
|
| 672 |
+
{
|
| 673 |
+
"@type": "cr:Field",
|
| 674 |
+
"@id": "results/f1",
|
| 675 |
+
"name": "f1",
|
| 676 |
+
"dataType": "sc:Float",
|
| 677 |
+
"source": {
|
| 678 |
+
"fileObject": {
|
| 679 |
+
"@id": "aet-bench-results.csv"
|
| 680 |
+
},
|
| 681 |
+
"extract": {
|
| 682 |
+
"column": "f1"
|
| 683 |
+
}
|
| 684 |
+
},
|
| 685 |
+
"description": "Atom localization F1 score."
|
| 686 |
+
},
|
| 687 |
+
{
|
| 688 |
+
"@type": "cr:Field",
|
| 689 |
+
"@id": "results/rmsd",
|
| 690 |
+
"name": "rmsd",
|
| 691 |
+
"dataType": "sc:Float",
|
| 692 |
+
"source": {
|
| 693 |
+
"fileObject": {
|
| 694 |
+
"@id": "aet-bench-results.csv"
|
| 695 |
+
},
|
| 696 |
+
"extract": {
|
| 697 |
+
"column": "rmsd"
|
| 698 |
+
}
|
| 699 |
+
},
|
| 700 |
+
"description": "Root mean square deviation of matched atoms."
|
| 701 |
+
},
|
| 702 |
+
{
|
| 703 |
+
"@type": "cr:Field",
|
| 704 |
+
"@id": "results/trajectory_rmsd",
|
| 705 |
+
"name": "trajectory_rmsd",
|
| 706 |
+
"dataType": "sc:Float",
|
| 707 |
+
"source": {
|
| 708 |
+
"fileObject": {
|
| 709 |
+
"@id": "aet-bench-results.csv"
|
| 710 |
+
},
|
| 711 |
+
"extract": {
|
| 712 |
+
"column": "trajectory_rmsd"
|
| 713 |
+
}
|
| 714 |
+
},
|
| 715 |
+
"description": "Trajectory RMSD for 4D methods."
|
| 716 |
+
},
|
| 717 |
+
{
|
| 718 |
+
"@type": "cr:Field",
|
| 719 |
+
"@id": "results/atom_identity_persistence",
|
| 720 |
+
"name": "atom_identity_persistence",
|
| 721 |
+
"dataType": "sc:Float",
|
| 722 |
+
"source": {
|
| 723 |
+
"fileObject": {
|
| 724 |
+
"@id": "aet-bench-results.csv"
|
| 725 |
+
},
|
| 726 |
+
"extract": {
|
| 727 |
+
"column": "atom_identity_persistence"
|
| 728 |
+
}
|
| 729 |
+
},
|
| 730 |
+
"description": "Fraction of atoms tracked consistently across phases."
|
| 731 |
+
},
|
| 732 |
+
{
|
| 733 |
+
"@type": "cr:Field",
|
| 734 |
+
"@id": "results/runtime_sec",
|
| 735 |
+
"name": "runtime_sec",
|
| 736 |
+
"dataType": "sc:Float",
|
| 737 |
+
"source": {
|
| 738 |
+
"fileObject": {
|
| 739 |
+
"@id": "aet-bench-results.csv"
|
| 740 |
+
},
|
| 741 |
+
"extract": {
|
| 742 |
+
"column": "runtime_sec"
|
| 743 |
+
}
|
| 744 |
+
},
|
| 745 |
+
"description": "Wall-clock runtime in seconds."
|
| 746 |
+
}
|
| 747 |
+
]
|
| 748 |
+
}
|
| 749 |
+
],
|
| 750 |
+
"rai:dataCollection": "Simulated data generated via ASE (nanoparticle construction), analytical Z^gamma forward model, and abTEM multislice. Real experimental data sourced from published Zenodo records: Zr-ZrO2 nanoparticles (DOI 10.5281/zenodo.12742309), MPEA2 high-entropy alloy (DOI 10.5281/zenodo.17310133), Pt Brownian tomography (DOI 10.5281/zenodo.15531575), RESIRE datasets (DOI 10.5281/zenodo.7819857), AlSiYb alloy (DOI 10.5281/zenodo.2578866), PdPt core-shell Zhou group (DOI 10.5281/zenodo.7733503), PdPt core-shell Yang group (DOI 10.5281/zenodo.8245312), NiPt multi-grained catalyst (DOI 10.5281/zenodo.15321070), AuPd icosahedral nanoparticles (DOI 10.5281/zenodo.14677350).",
|
| 751 |
+
"rai:dataCollectionType": "Automated simulation + published experimental measurements",
|
| 752 |
+
"rai:dataSocialImpact": "No direct social impact. Materials science research tool for advancing atomic-scale 3D/4D imaging of nanoparticles. No human subjects, no PII, no dual-use concerns.",
|
| 753 |
+
"rai:dataLimitations": "Real experimental data limited to publicly available Zenodo records. Brownian Pt tier uses synthetic projections from published reconstructions. Simulated data uses simplified Z^gamma forward model that does not capture dynamical scattering.",
|
| 754 |
+
"rai:dataBiases": "The benchmark is biased toward inorganic metal and oxide nanoparticles, HAADF-STEM acquisition, public Zenodo releases, and high-Z materials with strong contrast. Crystalline catalyst and alloy structures are better represented than biological specimens, low-Z soft materials, bright-field TEM, or in-situ experiments with severe drift and contamination.",
|
| 755 |
+
"rai:personalSensitiveInformation": "None. AET-Bench contains simulated nanoparticles, physical-science microscopy data, reconstruction volumes, atomic coordinates, and benchmark metrics. It contains no human subjects, personal identifiers, demographic attributes, health data, or other sensitive personal information.",
|
| 756 |
+
"rai:dataUseCases": "Intended uses include benchmarking atomic electron tomography reconstruction, atom localization, element classification, 4D trajectory tracking, robustness analysis, and reproducibility studies for materials-science imaging. The dataset is not intended for clinical decision-making, human-subject analysis, surveillance, or unsupported claims about microscopy modalities outside the documented HAADF-STEM and simulation settings.",
|
| 757 |
+
"rai:hasSyntheticData": true,
|
| 758 |
+
"prov:wasDerivedFrom": [
|
| 759 |
+
"https://doi.org/10.5281/zenodo.12742309",
|
| 760 |
+
"https://doi.org/10.5281/zenodo.17310133",
|
| 761 |
+
"https://doi.org/10.5281/zenodo.15531575",
|
| 762 |
+
"https://doi.org/10.5281/zenodo.7819857",
|
| 763 |
+
"https://doi.org/10.5281/zenodo.2578866",
|
| 764 |
+
"https://doi.org/10.5281/zenodo.7733503",
|
| 765 |
+
"https://doi.org/10.5281/zenodo.8245312",
|
| 766 |
+
"https://doi.org/10.5281/zenodo.15321070",
|
| 767 |
+
"https://doi.org/10.5281/zenodo.14677350"
|
| 768 |
+
],
|
| 769 |
+
"prov:wasGeneratedBy": "Simulated tiers are generated by the repository scripts for analytical Z^gamma projections, binary-alloy particle construction, 4D dynamics, dose-controlled projections, and abTEM multislice simulations. Real tiers are converted from public Zenodo microscopy/reconstruction records into the repository's common NAF pickle format with manifests and per-sample metadata. Benchmark results are produced by scripts/run_benchmark.py and audited with scripts/validate_results.py.",
|
| 770 |
+
"isLiveDataset": false
|
| 771 |
+
}
|