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data: upload croissant.json

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  1. croissant.json +771 -0
croissant.json ADDED
@@ -0,0 +1,771 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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+ {
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+ "@context": {
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+ "@vocab": "https://schema.org/",
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+ "sc": "https://schema.org/",
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+ "ml": "http://mlcommons.org/croissant/",
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+ "rai": "http://mlcommons.org/croissant/RAI/",
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+ "prov": "http://www.w3.org/ns/prov#",
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+ "cr": "http://mlcommons.org/croissant/",
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+ "dct": "http://purl.org/dc/terms/",
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+ "conformsTo": "dct:conformsTo",
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+ "recordSet": "cr:recordSet",
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+ "field": "cr:field",
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+ "dataType": "cr:dataType",
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+ "source": "cr:source",
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+ "fileObject": "cr:fileObject",
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+ "fileSet": "cr:fileSet",
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+ "extract": "cr:extract",
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+ "column": "cr:column",
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+ "containedIn": "cr:containedIn",
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+ "includes": "cr:includes",
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+ "isLiveDataset": "cr:isLiveDataset",
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+ "key": "cr:key"
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+ },
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+ "@type": "sc:Dataset",
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+ "name": "AET-Bench",
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+ "description": "AET-Bench: A Comprehensive Benchmark for Atomic Electron Tomography Reconstruction. 755 samples across 6 data tiers (analytical simulation, binary alloys, 4D dynamics, multislice, real experimental from published studies, Brownian Pt nanocrystals), 14 primary reconstruction methods from 5 algorithmic families (plus supplementary baselines), 4 evaluation tasks, and 14,000+ result rows.",
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+ "license": "https://creativecommons.org/licenses/by/4.0/",
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+ "url": "https://huggingface.co/datasets/pone7/4D-ATE",
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+ "conformsTo": "http://mlcommons.org/croissant/1.0",
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+ "version": "1.0.0",
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+ "datePublished": "2026-04-10",
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+ "creator": {
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+ "@type": "sc:Organization",
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+ "name": "Anonymous (under review)"
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+ },
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+ "keywords": [
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+ "atomic electron tomography",
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+ "HAADF-STEM",
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+ "3D reconstruction",
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+ "4D dynamic imaging",
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+ "Gaussian splatting",
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+ "benchmark",
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+ "nanoparticle",
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+ "materials science"
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+ ],
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+ "distribution": [
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-samples.csv",
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+ "name": "aet-bench-samples.csv",
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+ "description": "One row per released AET-Bench sample, including paths to sample metadata, NAF pickle data, and atom coordinates.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-samples.csv",
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+ "encodingFormat": "text/csv",
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+ "contentSize": "260124 B",
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+ "sha256": "cf28c95685743acf1272a098f7bc73f295c7c4bb8afea7d45e266411ac89ee7f"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-results.csv",
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+ "name": "aet-bench-results.csv",
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+ "description": "Columnar view of the benchmark result log for Croissant validators and reviewer inspection.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-results.csv",
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+ "encodingFormat": "text/csv",
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+ "contentSize": "937719 B",
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+ "sha256": "b147cc1fb4ff3e278c8232392a9042cb133d3cdb431fa2198afecce4a8eda0c1"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "results.jsonl",
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+ "name": "results.jsonl",
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+ "description": "Canonical benchmark result log used by paper table and figure generation.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/results.jsonl",
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+ "encodingFormat": "application/jsonlines",
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+ "contentSize": "26055448 B",
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+ "sha256": "399875278020a7fcc9d66847b4586d998e61eeff8c473cca55c8acb3d326bef4"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-mono.tar.part-000",
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+ "name": "aet-bench-mono.tar.part-000",
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+ "description": "Part 1 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-000",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "8589934592 B",
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-mono.tar.part-001",
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+ "name": "aet-bench-mono.tar.part-001",
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+ "description": "Part 2 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-001",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "8589934592 B",
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+ "sha256": "c9b09f2e34fbb0ffcd4a72ed34ca8011bff831643812122b0228782f13a8f893"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-mono.tar.part-002",
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+ "name": "aet-bench-mono.tar.part-002",
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+ "description": "Part 3 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-002",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "8589934592 B",
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+ "sha256": "d6919ee3264ae531f3d03409b58699ed3d36ecf7cb842cc44e926925cfd32cf6"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-mono.tar.part-003",
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+ "name": "aet-bench-mono.tar.part-003",
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+ "description": "Part 4 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-003",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "8589934592 B",
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+ "sha256": "1679247e483d4e5e0cab6fd7156f1c151419d8ac4aaa352159d7e78541da66d8"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-mono.tar.part-004",
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+ "name": "aet-bench-mono.tar.part-004",
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+ "description": "Part 5 of 5 for aet-bench-mono.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 926adcfb2fc73c1d62b8c44befc9963540899f55a07669022da99c0376674602.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-mono.tar.part-004",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "1949233152 B",
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+ "sha256": "c36f7a8f2817b4220abd4d8214cd0374c207f698db67fcd0e9a6c66abbabcaf2"
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+ },
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+ {
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+ "@type": "cr:FileSet",
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+ "@id": "mono-files",
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+ "name": "mono tier files",
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+ "containedIn": [
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+ {
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+ "@id": "aet-bench-mono.tar.part-000"
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+ },
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+ {
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+ "@id": "aet-bench-mono.tar.part-001"
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+ },
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+ {
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+ "@id": "aet-bench-mono.tar.part-002"
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+ },
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+ {
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+ "@id": "aet-bench-mono.tar.part-003"
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+ },
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+ {
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+ "@id": "aet-bench-mono.tar.part-004"
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+ }
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+ ],
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+ "encodingFormat": "application/octet-stream",
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+ "includes": "data/aet_bench/mono/**/*",
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+ "description": "Files contained in the reconstructed aet-bench-mono.tar archive. Concatenate the listed parts before extracting."
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-bi.tar.part-000",
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+ "name": "aet-bench-bi.tar.part-000",
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+ "description": "Part 1 of 3 for aet-bench-bi.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 6661b6b85c267e28010d479e854a95a84cf5bab8dde45cc0ed6a247b7a85b3e2.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-bi.tar.part-000",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "8589934592 B",
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+ "sha256": "40ce4a10dc709d60abb1f1d48d5ad4faa5f0a00141623d4e8d4f450d4f7417d7"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-bi.tar.part-001",
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+ "name": "aet-bench-bi.tar.part-001",
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+ "description": "Part 2 of 3 for aet-bench-bi.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 6661b6b85c267e28010d479e854a95a84cf5bab8dde45cc0ed6a247b7a85b3e2.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-bi.tar.part-001",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "8589934592 B",
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+ "sha256": "fe38c030d152d16d8a84bca7da408bf9bf65f6c2b42ca858a27a8284030f79b9"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-bi.tar.part-002",
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+ "name": "aet-bench-bi.tar.part-002",
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+ "description": "Part 3 of 3 for aet-bench-bi.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 6661b6b85c267e28010d479e854a95a84cf5bab8dde45cc0ed6a247b7a85b3e2.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-bi.tar.part-002",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "4075012096 B",
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+ "sha256": "a9068c1d6a7627f1398d0a24c7b4e16e491ade92ad7c27edf3e4c16ab940ee09"
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+ },
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+ {
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+ "@type": "cr:FileSet",
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+ "@id": "bi-files",
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+ "name": "bi tier files",
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+ "containedIn": [
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+ {
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+ "@id": "aet-bench-bi.tar.part-000"
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+ },
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+ {
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+ "@id": "aet-bench-bi.tar.part-001"
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+ },
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+ {
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+ "@id": "aet-bench-bi.tar.part-002"
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+ }
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+ ],
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+ "encodingFormat": "application/octet-stream",
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+ "includes": "data/aet_bench/bi/**/*",
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+ "description": "Files contained in the reconstructed aet-bench-bi.tar archive. Concatenate the listed parts before extracting."
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-sim4d.tar",
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+ "name": "aet-bench-sim4d.tar",
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+ "description": "AET-Bench sim4d tier archive.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-sim4d.tar",
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+ "encodingFormat": "application/x-tar",
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+ "contentSize": "885698560 B",
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+ "sha256": "7b9bac6e5dcf3e4936739fa045a65bc572b40f00f476a7848918096bdd981a69"
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+ },
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+ {
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+ "@type": "cr:FileSet",
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+ "@id": "sim4d-files",
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+ "name": "sim4d tier files",
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+ "containedIn": {
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+ "@id": "aet-bench-sim4d.tar"
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+ },
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+ "encodingFormat": "application/octet-stream",
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+ "includes": "data/aet_bench/sim4d/**/*"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-multislice.tar",
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+ "name": "aet-bench-multislice.tar",
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+ "description": "AET-Bench multislice tier archive.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-multislice.tar",
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+ "encodingFormat": "application/x-tar",
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+ "contentSize": "264232960 B",
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+ "sha256": "607f547505f4c6a4ae32899be088107a41918728544b224897be81bde9c528fa"
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+ },
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+ {
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+ "@type": "cr:FileSet",
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+ "@id": "multislice-files",
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+ "name": "multislice tier files",
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+ "containedIn": {
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+ "@id": "aet-bench-multislice.tar"
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+ },
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+ "encodingFormat": "application/octet-stream",
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+ "includes": "data/aet_bench/multislice/**/*"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-real.tar.part-000",
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+ "name": "aet-bench-real.tar.part-000",
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+ "description": "Part 1 of 2 for aet-bench-real.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 7e433949b0c53d739b594bf724d4505e7e348b7ca1113e0838da630ae242e43d.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-real.tar.part-000",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "8589934592 B",
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+ "sha256": "edca645c96ef5fd2005074f22eaa3c79e5f7fac29a9b344b2fb084c60a37b58a"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-real.tar.part-001",
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+ "name": "aet-bench-real.tar.part-001",
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+ "description": "Part 2 of 2 for aet-bench-real.tar. Concatenate all parts in lexical order to reconstruct the original tar; original SHA256: 7e433949b0c53d739b594bf724d4505e7e348b7ca1113e0838da630ae242e43d.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-real.tar.part-001",
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+ "encodingFormat": "application/octet-stream",
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+ "contentSize": "2051053568 B",
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+ "sha256": "cf13be71439e28098ead39894a63376f0683bce1e65a3ee6026f40aa9bf15a4e"
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+ },
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+ {
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+ "@type": "cr:FileSet",
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+ "@id": "real-files",
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+ "name": "real tier files",
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+ "containedIn": [
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+ {
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+ "@id": "aet-bench-real.tar.part-000"
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+ },
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+ {
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+ "@id": "aet-bench-real.tar.part-001"
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+ }
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+ ],
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+ "encodingFormat": "application/octet-stream",
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+ "includes": "data/aet_bench/real/**/*",
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+ "description": "Files contained in the reconstructed aet-bench-real.tar archive. Concatenate the listed parts before extracting."
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "aet-bench-brownian_pt.tar",
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+ "name": "aet-bench-brownian_pt.tar",
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+ "description": "AET-Bench brownian_pt tier archive.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/aet-bench-brownian_pt.tar",
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+ "encodingFormat": "application/x-tar",
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+ "contentSize": "5796802560 B",
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+ "sha256": "1ddd636ccc8228e7395953848dc831ced42d61e5e27d47e836b1fe62357e305e"
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+ },
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+ {
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+ "@type": "cr:FileSet",
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+ "@id": "brownian_pt-files",
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+ "name": "brownian_pt tier files",
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+ "containedIn": {
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+ "@id": "aet-bench-brownian_pt.tar"
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+ },
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+ "encodingFormat": "application/octet-stream",
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+ "includes": "data/aet_bench/brownian_pt/**/*"
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+ },
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+ {
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+ "@type": "cr:FileObject",
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+ "@id": "ORIGINAL_ARCHIVE_SHA256SUMS",
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+ "name": "ORIGINAL_ARCHIVE_SHA256SUMS",
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+ "description": "AET-Bench release metadata file ORIGINAL_ARCHIVE_SHA256SUMS.",
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+ "contentUrl": "https://huggingface.co/datasets/pone7/4D-ATE/resolve/main/ORIGINAL_ARCHIVE_SHA256SUMS",
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+ "encodingFormat": "text/plain",
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+ "contentSize": "522 B",
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+ "sha256": "b28c26c4ab58b1ddb7670d8d95c965fdbde83ee7d6099a9dd40fa8df7c7574e8"
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+ }
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+ ],
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+ "recordSet": [
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+ {
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+ "@type": "cr:RecordSet",
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+ "@id": "samples",
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+ "name": "samples",
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+ "description": "One row per released AET-Bench sample.",
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+ "key": {
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+ "@id": "samples/sample_id"
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+ },
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+ "field": [
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+ {
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+ "@type": "cr:Field",
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+ "@id": "samples/sample_id",
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+ "name": "sample_id",
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+ "dataType": "sc:Text",
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+ "source": {
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+ "fileObject": {
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+ "@id": "aet-bench-samples.csv"
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+ },
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+ "extract": {
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+ "column": "sample_id"
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+ }
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+ },
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+ "description": "Unique sample identifier."
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+ },
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+ {
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+ "@type": "cr:Field",
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+ "@id": "samples/subset",
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+ "name": "subset",
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+ "dataType": "sc:Text",
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+ "source": {
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+ "fileObject": {
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+ "@id": "aet-bench-samples.csv"
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+ },
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+ "extract": {
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+ "column": "subset"
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+ }
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+ },
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+ "description": "Data tier."
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+ },
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+ {
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+ "@type": "cr:Field",
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+ "@id": "samples/element",
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+ "name": "element",
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+ "dataType": "sc:Text",
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+ "source": {
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+ "fileObject": {
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+ "@id": "aet-bench-samples.csv"
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+ },
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+ "extract": {
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+ "column": "element"
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+ }
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+ },
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+ "description": "Chemical element or element system."
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+ },
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+ {
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+ "@type": "cr:Field",
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+ "@id": "samples/n_atoms",
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+ "name": "n_atoms",
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+ "dataType": "sc:Integer",
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+ "source": {
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+ "fileObject": {
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+ "@id": "aet-bench-samples.csv"
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+ },
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+ "extract": {
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+ "column": "n_atoms"
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+ }
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+ },
376
+ "description": "Number of reference atoms, if available."
377
+ },
378
+ {
379
+ "@type": "cr:Field",
380
+ "@id": "samples/n_angles",
381
+ "name": "n_angles",
382
+ "dataType": "sc:Integer",
383
+ "source": {
384
+ "fileObject": {
385
+ "@id": "aet-bench-samples.csv"
386
+ },
387
+ "extract": {
388
+ "column": "n_angles"
389
+ }
390
+ },
391
+ "description": "Number of projection angles."
392
+ },
393
+ {
394
+ "@type": "cr:Field",
395
+ "@id": "samples/has_atom_gt",
396
+ "name": "has_atom_gt",
397
+ "dataType": "sc:Boolean",
398
+ "source": {
399
+ "fileObject": {
400
+ "@id": "aet-bench-samples.csv"
401
+ },
402
+ "extract": {
403
+ "column": "has_atom_gt"
404
+ }
405
+ },
406
+ "description": "Whether atom-level reference coordinates are included."
407
+ },
408
+ {
409
+ "@type": "cr:Field",
410
+ "@id": "samples/metadata_path",
411
+ "name": "metadata_path",
412
+ "dataType": "sc:Text",
413
+ "source": {
414
+ "fileObject": {
415
+ "@id": "aet-bench-samples.csv"
416
+ },
417
+ "extract": {
418
+ "column": "metadata_path"
419
+ }
420
+ },
421
+ "description": "Path to per-sample metadata JSON inside the release archives."
422
+ },
423
+ {
424
+ "@type": "cr:Field",
425
+ "@id": "samples/data_pickle_path",
426
+ "name": "data_pickle_path",
427
+ "dataType": "sc:Text",
428
+ "source": {
429
+ "fileObject": {
430
+ "@id": "aet-bench-samples.csv"
431
+ },
432
+ "extract": {
433
+ "column": "data_pickle_path"
434
+ }
435
+ },
436
+ "description": "Path to the NAF-format pickle inside the release archives."
437
+ },
438
+ {
439
+ "@type": "cr:Field",
440
+ "@id": "samples/atoms_gt_path",
441
+ "name": "atoms_gt_path",
442
+ "dataType": "sc:Text",
443
+ "source": {
444
+ "fileObject": {
445
+ "@id": "aet-bench-samples.csv"
446
+ },
447
+ "extract": {
448
+ "column": "atoms_gt_path"
449
+ }
450
+ },
451
+ "description": "Path to atom-coordinate NumPy file, if available."
452
+ },
453
+ {
454
+ "@type": "cr:Field",
455
+ "@id": "samples/atoms_gt_4d_path",
456
+ "name": "atoms_gt_4d_path",
457
+ "dataType": "sc:Text",
458
+ "source": {
459
+ "fileObject": {
460
+ "@id": "aet-bench-samples.csv"
461
+ },
462
+ "extract": {
463
+ "column": "atoms_gt_4d_path"
464
+ }
465
+ },
466
+ "description": "Path to 4D atom-coordinate NumPy file, if available."
467
+ },
468
+ {
469
+ "@type": "cr:Field",
470
+ "@id": "samples/tier_archive",
471
+ "name": "tier_archive",
472
+ "dataType": "sc:Text",
473
+ "source": {
474
+ "fileObject": {
475
+ "@id": "aet-bench-samples.csv"
476
+ },
477
+ "extract": {
478
+ "column": "tier_archive"
479
+ }
480
+ },
481
+ "description": "Archive containing the sample files."
482
+ },
483
+ {
484
+ "@type": "cr:Field",
485
+ "@id": "samples/archive_member_prefix",
486
+ "name": "archive_member_prefix",
487
+ "dataType": "sc:Text",
488
+ "source": {
489
+ "fileObject": {
490
+ "@id": "aet-bench-samples.csv"
491
+ },
492
+ "extract": {
493
+ "column": "archive_member_prefix"
494
+ }
495
+ },
496
+ "description": "Directory prefix for the sample inside the tier archive."
497
+ },
498
+ {
499
+ "@type": "cr:Field",
500
+ "@id": "samples/source",
501
+ "name": "source",
502
+ "dataType": "sc:Text",
503
+ "source": {
504
+ "fileObject": {
505
+ "@id": "aet-bench-samples.csv"
506
+ },
507
+ "extract": {
508
+ "column": "source"
509
+ }
510
+ },
511
+ "description": "Original source for real-data samples when applicable."
512
+ }
513
+ ]
514
+ },
515
+ {
516
+ "@type": "cr:RecordSet",
517
+ "@id": "results",
518
+ "name": "results",
519
+ "description": "Benchmark evaluation results.",
520
+ "key": {
521
+ "@id": "results/result_row_id"
522
+ },
523
+ "field": [
524
+ {
525
+ "@type": "cr:Field",
526
+ "@id": "results/result_row_id",
527
+ "name": "result_row_id",
528
+ "dataType": "sc:Integer",
529
+ "source": {
530
+ "fileObject": {
531
+ "@id": "aet-bench-results.csv"
532
+ },
533
+ "extract": {
534
+ "column": "result_row_id"
535
+ }
536
+ },
537
+ "description": "Stable row number in the release CSV."
538
+ },
539
+ {
540
+ "@type": "cr:Field",
541
+ "@id": "results/sample_id",
542
+ "name": "sample_id",
543
+ "dataType": "sc:Text",
544
+ "source": {
545
+ "fileObject": {
546
+ "@id": "aet-bench-results.csv"
547
+ },
548
+ "extract": {
549
+ "column": "sample_id"
550
+ }
551
+ }
552
+ },
553
+ {
554
+ "@type": "cr:Field",
555
+ "@id": "results/subset",
556
+ "name": "subset",
557
+ "dataType": "sc:Text",
558
+ "source": {
559
+ "fileObject": {
560
+ "@id": "aet-bench-results.csv"
561
+ },
562
+ "extract": {
563
+ "column": "subset"
564
+ }
565
+ }
566
+ },
567
+ {
568
+ "@type": "cr:Field",
569
+ "@id": "results/method",
570
+ "name": "method",
571
+ "dataType": "sc:Text",
572
+ "source": {
573
+ "fileObject": {
574
+ "@id": "aet-bench-results.csv"
575
+ },
576
+ "extract": {
577
+ "column": "method"
578
+ }
579
+ },
580
+ "description": "Reconstruction method identifier."
581
+ },
582
+ {
583
+ "@type": "cr:Field",
584
+ "@id": "results/task",
585
+ "name": "task",
586
+ "dataType": "sc:Text",
587
+ "source": {
588
+ "fileObject": {
589
+ "@id": "aet-bench-results.csv"
590
+ },
591
+ "extract": {
592
+ "column": "task"
593
+ }
594
+ },
595
+ "description": "Evaluation task identifier."
596
+ },
597
+ {
598
+ "@type": "cr:Field",
599
+ "@id": "results/vol_psnr",
600
+ "name": "vol_psnr",
601
+ "dataType": "sc:Float",
602
+ "source": {
603
+ "fileObject": {
604
+ "@id": "aet-bench-results.csv"
605
+ },
606
+ "extract": {
607
+ "column": "vol_psnr"
608
+ }
609
+ },
610
+ "description": "Peak signal-to-noise ratio."
611
+ },
612
+ {
613
+ "@type": "cr:Field",
614
+ "@id": "results/vol_ssim",
615
+ "name": "vol_ssim",
616
+ "dataType": "sc:Float",
617
+ "source": {
618
+ "fileObject": {
619
+ "@id": "aet-bench-results.csv"
620
+ },
621
+ "extract": {
622
+ "column": "vol_ssim"
623
+ }
624
+ },
625
+ "description": "Structural similarity index."
626
+ },
627
+ {
628
+ "@type": "cr:Field",
629
+ "@id": "results/fsc_0.143_angstrom",
630
+ "name": "fsc_0.143_angstrom",
631
+ "dataType": "sc:Float",
632
+ "source": {
633
+ "fileObject": {
634
+ "@id": "aet-bench-results.csv"
635
+ },
636
+ "extract": {
637
+ "column": "fsc_0.143_angstrom"
638
+ }
639
+ },
640
+ "description": "Fourier shell correlation resolution at threshold 0.143."
641
+ },
642
+ {
643
+ "@type": "cr:Field",
644
+ "@id": "results/recall",
645
+ "name": "recall",
646
+ "dataType": "sc:Float",
647
+ "source": {
648
+ "fileObject": {
649
+ "@id": "aet-bench-results.csv"
650
+ },
651
+ "extract": {
652
+ "column": "recall"
653
+ }
654
+ },
655
+ "description": "Atom localization recall."
656
+ },
657
+ {
658
+ "@type": "cr:Field",
659
+ "@id": "results/precision",
660
+ "name": "precision",
661
+ "dataType": "sc:Float",
662
+ "source": {
663
+ "fileObject": {
664
+ "@id": "aet-bench-results.csv"
665
+ },
666
+ "extract": {
667
+ "column": "precision"
668
+ }
669
+ },
670
+ "description": "Atom localization precision."
671
+ },
672
+ {
673
+ "@type": "cr:Field",
674
+ "@id": "results/f1",
675
+ "name": "f1",
676
+ "dataType": "sc:Float",
677
+ "source": {
678
+ "fileObject": {
679
+ "@id": "aet-bench-results.csv"
680
+ },
681
+ "extract": {
682
+ "column": "f1"
683
+ }
684
+ },
685
+ "description": "Atom localization F1 score."
686
+ },
687
+ {
688
+ "@type": "cr:Field",
689
+ "@id": "results/rmsd",
690
+ "name": "rmsd",
691
+ "dataType": "sc:Float",
692
+ "source": {
693
+ "fileObject": {
694
+ "@id": "aet-bench-results.csv"
695
+ },
696
+ "extract": {
697
+ "column": "rmsd"
698
+ }
699
+ },
700
+ "description": "Root mean square deviation of matched atoms."
701
+ },
702
+ {
703
+ "@type": "cr:Field",
704
+ "@id": "results/trajectory_rmsd",
705
+ "name": "trajectory_rmsd",
706
+ "dataType": "sc:Float",
707
+ "source": {
708
+ "fileObject": {
709
+ "@id": "aet-bench-results.csv"
710
+ },
711
+ "extract": {
712
+ "column": "trajectory_rmsd"
713
+ }
714
+ },
715
+ "description": "Trajectory RMSD for 4D methods."
716
+ },
717
+ {
718
+ "@type": "cr:Field",
719
+ "@id": "results/atom_identity_persistence",
720
+ "name": "atom_identity_persistence",
721
+ "dataType": "sc:Float",
722
+ "source": {
723
+ "fileObject": {
724
+ "@id": "aet-bench-results.csv"
725
+ },
726
+ "extract": {
727
+ "column": "atom_identity_persistence"
728
+ }
729
+ },
730
+ "description": "Fraction of atoms tracked consistently across phases."
731
+ },
732
+ {
733
+ "@type": "cr:Field",
734
+ "@id": "results/runtime_sec",
735
+ "name": "runtime_sec",
736
+ "dataType": "sc:Float",
737
+ "source": {
738
+ "fileObject": {
739
+ "@id": "aet-bench-results.csv"
740
+ },
741
+ "extract": {
742
+ "column": "runtime_sec"
743
+ }
744
+ },
745
+ "description": "Wall-clock runtime in seconds."
746
+ }
747
+ ]
748
+ }
749
+ ],
750
+ "rai:dataCollection": "Simulated data generated via ASE (nanoparticle construction), analytical Z^gamma forward model, and abTEM multislice. Real experimental data sourced from published Zenodo records: Zr-ZrO2 nanoparticles (DOI 10.5281/zenodo.12742309), MPEA2 high-entropy alloy (DOI 10.5281/zenodo.17310133), Pt Brownian tomography (DOI 10.5281/zenodo.15531575), RESIRE datasets (DOI 10.5281/zenodo.7819857), AlSiYb alloy (DOI 10.5281/zenodo.2578866), PdPt core-shell Zhou group (DOI 10.5281/zenodo.7733503), PdPt core-shell Yang group (DOI 10.5281/zenodo.8245312), NiPt multi-grained catalyst (DOI 10.5281/zenodo.15321070), AuPd icosahedral nanoparticles (DOI 10.5281/zenodo.14677350).",
751
+ "rai:dataCollectionType": "Automated simulation + published experimental measurements",
752
+ "rai:dataSocialImpact": "No direct social impact. Materials science research tool for advancing atomic-scale 3D/4D imaging of nanoparticles. No human subjects, no PII, no dual-use concerns.",
753
+ "rai:dataLimitations": "Real experimental data limited to publicly available Zenodo records. Brownian Pt tier uses synthetic projections from published reconstructions. Simulated data uses simplified Z^gamma forward model that does not capture dynamical scattering.",
754
+ "rai:dataBiases": "The benchmark is biased toward inorganic metal and oxide nanoparticles, HAADF-STEM acquisition, public Zenodo releases, and high-Z materials with strong contrast. Crystalline catalyst and alloy structures are better represented than biological specimens, low-Z soft materials, bright-field TEM, or in-situ experiments with severe drift and contamination.",
755
+ "rai:personalSensitiveInformation": "None. AET-Bench contains simulated nanoparticles, physical-science microscopy data, reconstruction volumes, atomic coordinates, and benchmark metrics. It contains no human subjects, personal identifiers, demographic attributes, health data, or other sensitive personal information.",
756
+ "rai:dataUseCases": "Intended uses include benchmarking atomic electron tomography reconstruction, atom localization, element classification, 4D trajectory tracking, robustness analysis, and reproducibility studies for materials-science imaging. The dataset is not intended for clinical decision-making, human-subject analysis, surveillance, or unsupported claims about microscopy modalities outside the documented HAADF-STEM and simulation settings.",
757
+ "rai:hasSyntheticData": true,
758
+ "prov:wasDerivedFrom": [
759
+ "https://doi.org/10.5281/zenodo.12742309",
760
+ "https://doi.org/10.5281/zenodo.17310133",
761
+ "https://doi.org/10.5281/zenodo.15531575",
762
+ "https://doi.org/10.5281/zenodo.7819857",
763
+ "https://doi.org/10.5281/zenodo.2578866",
764
+ "https://doi.org/10.5281/zenodo.7733503",
765
+ "https://doi.org/10.5281/zenodo.8245312",
766
+ "https://doi.org/10.5281/zenodo.15321070",
767
+ "https://doi.org/10.5281/zenodo.14677350"
768
+ ],
769
+ "prov:wasGeneratedBy": "Simulated tiers are generated by the repository scripts for analytical Z^gamma projections, binary-alloy particle construction, 4D dynamics, dose-controlled projections, and abTEM multislice simulations. Real tiers are converted from public Zenodo microscopy/reconstruction records into the repository's common NAF pickle format with manifests and per-sample metadata. Benchmark results are produced by scripts/run_benchmark.py and audited with scripts/validate_results.py.",
770
+ "isLiveDataset": false
771
+ }