File size: 12,499 Bytes
f3ad3db
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
#!/usr/bin/env python3
# Copyright 2026 SyzPilot Authors
# SPDX-License-Identifier: Apache-2.0
 
"""Convert the paired SyzPilot corpus into deterministic Parquet shards."""

from __future__ import annotations

import argparse
from concurrent.futures import ThreadPoolExecutor
import hashlib
import json
import math
import os
from pathlib import Path
import re
import sys
import time
from typing import Any

import pyarrow as pa
import pyarrow.parquet as pq


SCHEMA_VERSION = 1
ID_PATTERN = re.compile(r"^[0-9a-f]{40}$")
SCHEMA = pa.schema(
    [
        pa.field("id", pa.string(), nullable=False),
        pa.field("program", pa.string(), nullable=False),
        pa.field("coverage", pa.string(), nullable=False),
        pa.field("program_size_bytes", pa.int32(), nullable=False),
        pa.field("coverage_size_bytes", pa.int32(), nullable=False),
        pa.field("coverage_count", pa.int32(), nullable=False),
    ]
)


def parse_args() -> argparse.Namespace:
    parser = argparse.ArgumentParser(
        description=(
            "Convert dataset_224w/programs and dataset_224w/coverages into "
            "paired, deterministically ordered Parquet shards."
        )
    )
    parser.add_argument(
        "--source",
        type=Path,
        default=Path.home() / "datasets" / "dataset_224w",
        help="Directory containing programs/ and coverages/.",
    )
    parser.add_argument(
        "--output",
        type=Path,
        default=Path.cwd(),
        help="Dataset repository directory.",
    )
    parser.add_argument(
        "--rows-per-shard",
        type=int,
        default=5_000,
        help="Maximum rows in each Parquet shard.",
    )
    parser.add_argument(
        "--row-group-rows",
        type=int,
        default=512,
        help="Rows in each Parquet row group.",
    )
    parser.add_argument(
        "--workers",
        type=int,
        default=32,
        help="Threads used to read pairs of source files.",
    )
    parser.add_argument(
        "--compression-level",
        type=int,
        default=3,
        help="Zstandard compression level.",
    )
    parser.add_argument(
        "--limit",
        type=int,
        help="Convert only the first N sorted IDs (for validation runs only).",
    )
    args = parser.parse_args()
    if args.rows_per_shard <= 0:
        parser.error("--rows-per-shard must be positive")
    if args.row_group_rows <= 0:
        parser.error("--row-group-rows must be positive")
    if args.workers <= 0:
        parser.error("--workers must be positive")
    if args.limit is not None and args.limit <= 0:
        parser.error("--limit must be positive")
    return args


def file_sha256(path: Path, chunk_size: int = 8 * 1024 * 1024) -> str:
    digest = hashlib.sha256()
    with path.open("rb") as handle:
        for chunk in iter(lambda: handle.read(chunk_size), b""):
            digest.update(chunk)
    return digest.hexdigest()


def write_json_atomic(path: Path, value: Any) -> None:
    temporary = path.with_suffix(path.suffix + ".tmp")
    with temporary.open("w", encoding="utf-8") as handle:
        json.dump(value, handle, indent=2, sort_keys=True)
        handle.write("\n")
    os.replace(temporary, path)


def list_source_ids(directory: Path) -> list[str]:
    if not directory.is_dir():
        raise FileNotFoundError(f"source directory does not exist: {directory}")

    names: list[str] = []
    invalid: list[str] = []
    with os.scandir(directory) as entries:
        for entry in entries:
            if not entry.is_file(follow_symlinks=False):
                continue
            if not ID_PATTERN.fullmatch(entry.name):
                invalid.append(entry.name)
                if len(invalid) >= 10:
                    break
            names.append(entry.name)

    if invalid:
        joined = ", ".join(repr(name) for name in invalid)
        raise ValueError(f"unexpected source filenames in {directory}: {joined}")
    return names


def count_lines(data: bytes) -> int:
    if not data:
        return 0
    return data.count(b"\n") + (0 if data.endswith(b"\n") else 1)


def read_pair(
    item: tuple[str, Path, Path],
) -> tuple[str, str, str, int, int, int]:
    sample_id, program_dir, coverage_dir = item
    program_bytes = (program_dir / sample_id).read_bytes()
    coverage_bytes = (coverage_dir / sample_id).read_bytes()
    try:
        program = program_bytes.decode("utf-8")
        coverage = coverage_bytes.decode("ascii")
    except UnicodeDecodeError as error:
        raise ValueError(f"text decoding failed for sample {sample_id}") from error
    return (
        sample_id,
        program,
        coverage,
        len(program_bytes),
        len(coverage_bytes),
        count_lines(coverage_bytes),
    )


def build_table(rows: list[tuple[str, str, str, int, int, int]]) -> pa.Table:
    columns = list(zip(*rows, strict=True))
    return pa.Table.from_arrays(
        [pa.array(column, type=field.type) for column, field in zip(columns, SCHEMA)],
        schema=SCHEMA,
    )


def validate_source(program_dir: Path, coverage_dir: Path) -> list[str]:
    started = time.monotonic()
    print("Listing source IDs...", flush=True)
    program_ids = list_source_ids(program_dir)
    coverage_ids = set(list_source_ids(coverage_dir))
    program_set = set(program_ids)

    missing_coverages = sorted(program_set - coverage_ids)[:10]
    orphan_coverages = sorted(coverage_ids - program_set)[:10]
    if missing_coverages or orphan_coverages:
        raise ValueError(
            "program/coverage pairing mismatch; "
            f"missing coverage examples={missing_coverages}, "
            f"orphan coverage examples={orphan_coverages}"
        )

    del coverage_ids
    del program_set
    program_ids.sort()
    elapsed = time.monotonic() - started
    print(f"Validated {len(program_ids):,} paired IDs in {elapsed:.1f}s", flush=True)
    return program_ids


def load_state(path: Path, expected: dict[str, Any]) -> dict[str, Any]:
    if not path.exists():
        return {**expected, "completed_shards": {}}
    with path.open("r", encoding="utf-8") as handle:
        state = json.load(handle)
    for key, value in expected.items():
        if state.get(key) != value:
            raise ValueError(
                f"existing build state has {key}={state.get(key)!r}; "
                f"expected {value!r}"
            )
    if not isinstance(state.get("completed_shards"), dict):
        raise ValueError("existing build state has no completed_shards mapping")
    return state


def main() -> int:
    args = parse_args()
    source = args.source.resolve()
    output = args.output.resolve()
    program_dir = source / "programs"
    coverage_dir = source / "coverages"
    data_dir = output / "data"
    data_dir.mkdir(parents=True, exist_ok=True)

    sample_ids = validate_source(program_dir, coverage_dir)
    source_total = len(sample_ids)
    if args.limit is not None:
        sample_ids = sample_ids[: args.limit]
    total_rows = len(sample_ids)
    total_shards = math.ceil(total_rows / args.rows_per_shard)

    state_path = output / "_build_state.json"
    state_expected = {
        "schema_version": SCHEMA_VERSION,
        "source": str(source),
        "source_total_pairs": source_total,
        "selected_rows": total_rows,
        "rows_per_shard": args.rows_per_shard,
        "row_group_rows": args.row_group_rows,
        "compression": "zstd",
        "compression_level": args.compression_level,
    }
    state = load_state(state_path, state_expected)
    completed: dict[str, dict[str, Any]] = state["completed_shards"]
    build_started = time.monotonic()

    with ThreadPoolExecutor(max_workers=args.workers) as executor:
        for shard_index in range(total_shards):
            start = shard_index * args.rows_per_shard
            stop = min(start + args.rows_per_shard, total_rows)
            shard_ids = sample_ids[start:stop]
            shard_name = f"train-{shard_index:05d}-of-{total_shards:05d}.parquet"
            shard_path = data_dir / shard_name
            relative_path = f"data/{shard_name}"

            old_entry = completed.get(relative_path)
            if old_entry and shard_path.is_file():
                current_size = shard_path.stat().st_size
                if current_size == old_entry.get("size_bytes"):
                    current_hash = file_sha256(shard_path)
                    if current_hash == old_entry.get("sha256"):
                        print(
                            f"[{shard_index + 1}/{total_shards}] Reusing {shard_name}",
                            flush=True,
                        )
                        continue

            shard_started = time.monotonic()
            tasks = ((sample_id, program_dir, coverage_dir) for sample_id in shard_ids)
            rows = list(executor.map(read_pair, tasks, chunksize=16))
            table = build_table(rows)

            temporary = shard_path.with_suffix(".parquet.tmp")
            pq.write_table(
                table,
                temporary,
                compression="zstd",
                compression_level=args.compression_level,
                use_dictionary=False,
                write_statistics=[
                    "id",
                    "program_size_bytes",
                    "coverage_size_bytes",
                    "coverage_count",
                ],
                row_group_size=args.row_group_rows,
                data_page_size=1024 * 1024,
            )
            os.replace(temporary, shard_path)

            entry = {
                "first_id": shard_ids[0],
                "last_id": shard_ids[-1],
                "num_rows": len(rows),
                "program_bytes": sum(row[3] for row in rows),
                "coverage_bytes": sum(row[4] for row in rows),
                "coverage_addresses": sum(row[5] for row in rows),
                "size_bytes": shard_path.stat().st_size,
                "sha256": file_sha256(shard_path),
            }
            completed[relative_path] = entry
            write_json_atomic(state_path, state)

            elapsed = time.monotonic() - shard_started
            ratio = entry["size_bytes"] / max(
                entry["program_bytes"] + entry["coverage_bytes"], 1
            )
            print(
                f"[{shard_index + 1}/{total_shards}] Wrote {shard_name}: "
                f"{len(rows):,} rows, {entry['size_bytes'] / 2**20:.1f} MiB, "
                f"ratio={ratio:.3f}, {elapsed:.1f}s",
                flush=True,
            )

    expected_paths = {
        f"data/train-{index:05d}-of-{total_shards:05d}.parquet"
        for index in range(total_shards)
    }
    if set(completed) != expected_paths:
        missing = sorted(expected_paths - set(completed))[:10]
        extra = sorted(set(completed) - expected_paths)[:10]
        raise RuntimeError(f"build state mismatch: missing={missing}, extra={extra}")

    ordered_shards = [
        {"path": path, **completed[path]} for path in sorted(expected_paths)
    ]
    manifest = {
        "dataset": "SyzPilot-dataset",
        "format": "parquet",
        "schema_version": SCHEMA_VERSION,
        "schema": [
            {"name": field.name, "type": str(field.type), "nullable": field.nullable}
            for field in SCHEMA
        ],
        "ordering": "Rows are sorted lexicographically by id across shards.",
        "num_rows": sum(shard["num_rows"] for shard in ordered_shards),
        "num_shards": len(ordered_shards),
        "program_bytes": sum(shard["program_bytes"] for shard in ordered_shards),
        "coverage_bytes": sum(shard["coverage_bytes"] for shard in ordered_shards),
        "coverage_addresses": sum(
            shard["coverage_addresses"] for shard in ordered_shards
        ),
        "parquet_bytes": sum(shard["size_bytes"] for shard in ordered_shards),
        "shards": ordered_shards,
    }
    write_json_atomic(output / "manifest.json", manifest)

    elapsed = time.monotonic() - build_started
    print(
        f"Completed {manifest['num_rows']:,} rows in {manifest['num_shards']} "
        f"shards ({manifest['parquet_bytes'] / 2**30:.2f} GiB) in "
        f"{elapsed / 60:.1f} minutes.",
        flush=True,
    )
    return 0


if __name__ == "__main__":
    try:
        raise SystemExit(main())
    except KeyboardInterrupt:
        print("Interrupted; completed shards can be reused on the next run.", file=sys.stderr)
        raise SystemExit(130)