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qc/comparison_vs_stock.csv

@@ -0,0 +1,15 @@
+set,metric,stock,r6,delta
+validation,f1,0.6255,0.8237,0.1982
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+validation,dice,0.5691,0.8936,0.3245
+validation,pixel_iou,0.4824,0.8293,0.3469
+test,f1,0.7648,0.8602,0.0954
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+test,aji,0.505,0.8026,0.2976
+test,dice,0.6431,0.9059,0.2628
+test,pixel_iou,0.5239,0.8289,0.305

qc/r6_perimage.csv

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qc/stock_cpsam_v2_perimage.csv

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+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_L04_005,validation,old_new_set,stock_cpsam_v2,90,168,0,77,91,13,0.4583,0.8556,0.5969,0.3688,0.0848,0.0902,0.1655
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_L11_005,validation,old_new_set,stock_cpsam_v2,211,238,0,154,84,57,0.6471,0.7299,0.686,0.4069,0.2672,0.3034,0.4655
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_M02_009,validation,old_new_set,stock_cpsam_v2,154,197,0,81,116,73,0.4112,0.526,0.4615,0.2337,0.0822,0.09,0.1652
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_M05_014,validation,old_new_set,stock_cpsam_v2,212,275,0,176,99,36,0.64,0.8302,0.7228,0.4289,0.3305,0.3731,0.5434
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_M18_007,validation,old_new_set,stock_cpsam_v2,90,181,0,79,102,11,0.4365,0.8778,0.583,0.3394,0.0984,0.1053,0.1905
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_N09_014,validation,old_new_set,stock_cpsam_v2,255,285,0,180,105,75,0.6316,0.7059,0.6667,0.3896,0.2727,0.3132,0.477
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_N21_014,validation,old_new_set,stock_cpsam_v2,129,120,0,80,40,49,0.6667,0.6202,0.6426,0.4054,0.2373,0.2477,0.3971
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_P01_010,validation,old_new_set,stock_cpsam_v2,133,278,0,60,218,73,0.2158,0.4511,0.292,0.1098,0.0362,0.0407,0.0782
+me49__abTg__Anu_ME49ALIX_final_plate1_20230822_192029__plate1_P18_005,validation,old_new_set,stock_cpsam_v2,103,132,0,72,60,31,0.5455,0.699,0.6128,0.3624,0.1599,0.1744,0.297
+mtocScreen_20250530_111302__plate1_A14_1_1,validation,mtocScreen,stock_cpsam_v2,7,24,0,2,22,5,0.0833,0.2857,0.129,0.0511,0.0037,0.0037,0.0073
+mtocScreen_20250530_111302__plate1_A22_20_1,validation,mtocScreen,stock_cpsam_v2,12,19,0,9,10,3,0.4737,0.75,0.5806,0.3633,0.1482,0.1484,0.2584
+mtocScreen_20250530_111302__plate1_C01_15_1,validation,mtocScreen,stock_cpsam_v2,49,109,0,26,83,23,0.2385,0.5306,0.3291,0.165,0.289,0.4506,0.6212
+mtocScreen_20250530_111302__plate1_C01_4_1,validation,mtocScreen,stock_cpsam_v2,62,140,0,32,108,30,0.2286,0.5161,0.3168,0.1538,0.3087,0.5307,0.6934
+mtocScreen_20250530_111302__plate1_D04_7_1,validation,mtocScreen,stock_cpsam_v2,28,55,0,11,44,17,0.2,0.3929,0.2651,0.124,0.02,0.0221,0.0433
+mtocScreen_20250530_111302__plate1_E13_18_1,validation,mtocScreen,stock_cpsam_v2,27,50,0,9,41,18,0.18,0.3333,0.2338,0.0858,0.0218,0.0252,0.0492
+mtocScreen_20250530_111302__plate1_G17_9_1,validation,mtocScreen,stock_cpsam_v2,34,70,0,24,46,10,0.3429,0.7059,0.4615,0.2244,0.0449,0.0469,0.0895
+mtocScreen_20250530_111302__plate1_K04_6_1,validation,mtocScreen,stock_cpsam_v2,29,51,0,8,43,21,0.1569,0.2759,0.2,0.0484,0.0115,0.0198,0.0388
+mtocScreen_20250530_111302__plate1_M04_11_1,validation,mtocScreen,stock_cpsam_v2,32,34,0,9,25,23,0.2647,0.2812,0.2727,0.1501,0.024,0.024,0.0468
+mtocScreen_20250530_111302__plate1_M11_4_1,validation,mtocScreen,stock_cpsam_v2,23,56,0,18,38,5,0.3214,0.7826,0.4557,0.2195,0.0205,0.0208,0.0407
+mtocScreen_20250530_111302__plate1_N06_6_1,validation,mtocScreen,stock_cpsam_v2,34,38,0,18,20,16,0.4737,0.5294,0.5,0.2283,0.083,0.0908,0.1664
+mtocScreen_20250530_111302__plate1_P11_21_1,validation,mtocScreen,stock_cpsam_v2,50,55,0,38,17,12,0.6909,0.76,0.7238,0.4338,0.1822,0.1957,0.3273
+plate1_A02_12,validation,NAS_gold,stock_cpsam_v2,33,41,0,27,14,6,0.6585,0.8182,0.7297,0.4507,0.6706,0.773,0.872
+plate1_C08_19,validation,NAS_gold,stock_cpsam_v2,31,41,0,26,15,5,0.6341,0.8387,0.7222,0.3692,0.3985,0.462,0.632
+plate1_C14_10,validation,NAS_gold,stock_cpsam_v2,8,1,0,1,0,7,1.0,0.125,0.2222,0.0875,0.0792,0.0792,0.1467
+plate1_C22_19,validation,NAS_gold,stock_cpsam_v2,51,69,0,42,27,9,0.6087,0.8235,0.7,0.3798,0.6022,0.7299,0.8438
+plate1_F16_5,validation,NAS_gold,stock_cpsam_v2,25,29,0,18,11,7,0.6207,0.72,0.6667,0.3609,0.3381,0.3789,0.5496
+plate1_F24_21,validation,NAS_gold,stock_cpsam_v2,132,127,0,85,42,47,0.6693,0.6439,0.6564,0.3066,0.5987,0.683,0.8117
+plate1_H12_1,validation,NAS_gold,stock_cpsam_v2,12,14,0,7,7,5,0.5,0.5833,0.5385,0.2551,0.509,0.6181,0.764
+plate1_I01_15,validation,NAS_gold,stock_cpsam_v2,7,10,0,3,7,4,0.3,0.4286,0.3529,0.1929,0.0552,0.0552,0.1046
+plate1_J01_15,validation,NAS_gold,stock_cpsam_v2,10,9,0,5,4,5,0.5556,0.5,0.5263,0.2527,0.1813,0.1813,0.3069
+plate1_J02_8,validation,NAS_gold,stock_cpsam_v2,48,52,0,38,14,10,0.7308,0.7917,0.76,0.4315,0.7227,0.7572,0.8618
+plate1_O03_10,validation,NAS_gold,stock_cpsam_v2,61,64,0,50,14,11,0.7812,0.8197,0.8,0.4592,0.8064,0.857,0.923
+plate1_O10_13,validation,NAS_gold,stock_cpsam_v2,1,3,0,0,3,1,0.0,0.0,0.0,0.0,0.0,0.0,0.0
+plate1_O20_17,validation,NAS_gold,stock_cpsam_v2,7,6,0,4,2,3,0.6667,0.5714,0.6154,0.3015,0.1489,0.1489,0.2591
+plate6_B19_17,validation,NAS_gold,stock_cpsam_v2,60,75,0,48,27,12,0.64,0.8,0.7111,0.3554,0.6748,0.8039,0.8913
+plate6_C24_5,validation,NAS_gold,stock_cpsam_v2,10,29,0,2,27,8,0.069,0.2,0.1026,0.0486,0.0092,0.0092,0.0183
+plate6_D16_24,validation,NAS_gold,stock_cpsam_v2,45,49,0,38,11,7,0.7755,0.8444,0.8085,0.5192,0.8178,0.846,0.9166
+plate6_E14_12,validation,NAS_gold,stock_cpsam_v2,128,147,0,110,37,18,0.7483,0.8594,0.8,0.4622,0.7152,0.775,0.8732
+plate6_H20_5,validation,NAS_gold,stock_cpsam_v2,73,87,0,49,38,24,0.5632,0.6712,0.6125,0.3433,0.6813,0.8023,0.8903
+plate6_I07_6,validation,NAS_gold,stock_cpsam_v2,188,198,0,164,34,24,0.8283,0.8723,0.8497,0.5098,0.793,0.8282,0.9061
+plate6_J05_14,validation,NAS_gold,stock_cpsam_v2,79,82,0,62,20,17,0.7561,0.7848,0.7702,0.4716,0.7081,0.759,0.863
+plate6_L03_12,validation,NAS_gold,stock_cpsam_v2,60,57,0,50,7,10,0.8772,0.8333,0.8547,0.5946,0.8547,0.8697,0.9303
+plate6_N05_13,validation,NAS_gold,stock_cpsam_v2,101,116,0,80,36,21,0.6897,0.7921,0.7373,0.4106,0.7241,0.8034,0.891
+plate6_O02_5,validation,NAS_gold,stock_cpsam_v2,58,60,0,43,17,15,0.7167,0.7414,0.7288,0.4485,0.78,0.8754,0.9335
+plate6_O02_6,validation,NAS_gold,stock_cpsam_v2,74,73,0,61,12,13,0.8356,0.8243,0.8299,0.5256,0.8321,0.8844,0.9387
+plate6_O13_18,validation,NAS_gold,stock_cpsam_v2,68,87,0,60,27,8,0.6897,0.8824,0.7742,0.4227,0.7013,0.7936,0.8849
+plate1_F19_16,test,NAS_gold,stock_cpsam_v2,8,6,0,5,1,3,0.8333,0.625,0.7143,0.2396,0.4678,0.4678,0.6374
+plate2_C07_19,test,NAS_gold,stock_cpsam_v2,44,49,0,41,8,3,0.8367,0.9318,0.8817,0.5088,0.7949,0.8507,0.9193
+plate2_G24_16,test,NAS_gold,stock_cpsam_v2,0,2,1,0,2,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0
+plate2_I07_2,test,NAS_gold,stock_cpsam_v2,18,6,0,5,1,13,0.8333,0.2778,0.4167,0.1702,0.175,0.175,0.2979
+plate5_D07_14,test,NAS_gold,stock_cpsam_v2,71,63,0,54,9,17,0.8571,0.7606,0.806,0.4431,0.8019,0.8207,0.9016
+plate6_G23_17,test,NAS_gold,stock_cpsam_v2,6,41,0,2,39,4,0.0488,0.3333,0.0851,0.0219,0.0031,0.0031,0.0061
+plate6_N12_15,test,NAS_gold,stock_cpsam_v2,47,56,0,40,16,7,0.7143,0.8511,0.7767,0.4504,0.5124,0.5253,0.6887
+plate7_E09_23,test,NAS_gold,stock_cpsam_v2,155,153,0,123,30,32,0.8039,0.7935,0.7987,0.4738,0.7298,0.7567,0.8615
+plate7_F17_15,test,NAS_gold,stock_cpsam_v2,99,101,0,77,24,22,0.7624,0.7778,0.77,0.4524,0.553,0.5777,0.7323
+plate7_F18_2,test,NAS_gold,stock_cpsam_v2,99,100,0,76,24,23,0.76,0.7677,0.7638,0.4461,0.4643,0.4969,0.6639
+plate7_K07_8,test,NAS_gold,stock_cpsam_v2,136,128,0,107,21,29,0.8359,0.7868,0.8106,0.4136,0.5479,0.5653,0.7223

qc/summary.json

@@ -0,0 +1,50 @@
+{
+  "r6": {
+    "validation": {
+      "n_fields": 96,
+      "n_true": 8959,
+      "precision": 0.9058,
+      "recall": 0.7553,
+      "f1": 0.8237,
+      "mAP": 0.6033,
+      "aji": 0.7927,
+      "dice": 0.8936,
+      "pixel_iou": 0.8293
+    },
+    "test": {
+      "n_fields": 10,
+      "n_true": 683,
+      "precision": 0.8468,
+      "recall": 0.8741,
+      "f1": 0.8602,
+      "mAP": 0.5061,
+      "aji": 0.8026,
+      "dice": 0.9059,
+      "pixel_iou": 0.8289
+    }
+  },
+  "stock_cpsam_v2": {
+    "validation": {
+      "n_fields": 96,
+      "n_true": 8959,
+      "precision": 0.5719,
+      "recall": 0.6903,
+      "f1": 0.6255,
+      "mAP": 0.3322,
+      "aji": 0.3907,
+      "dice": 0.5691,
+      "pixel_iou": 0.4824
+    },
+    "test": {
+      "n_fields": 10,
+      "n_true": 683,
+      "precision": 0.7539,
+      "recall": 0.776,
+      "f1": 0.7648,
+      "mAP": 0.362,
+      "aji": 0.505,
+      "dice": 0.6431,
+      "pixel_iou": 0.5239
+    }
+  }
+}