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einarolafsson
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toxoplasma-pv-segmentation-cpsam

Image Segmentation
spacr
cellpose
segmentation
toxoplasma
microscopy
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toxoplasma-pv-segmentation-cpsam
File size: 1,553 Bytes
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{
  "base": "cpsam_v2",
  "n_pairs": 115,
  "n_train": 104,
  "n_test": 11,
  "n_epochs": 100,
  "weights": "/media/carruthers/mnt3/claude/toxoplasma_projects/cellpose_toxo_v2/models/cpsam_v2_toxo",
  "f1_at_0.5": 0.8668,
  "precision_at_0.5": 0.8482,
  "recall_at_0.5": 0.8862,
  "mAP_0.5_0.9": 0.5952,
  "aggregated_jaccard": 0.8083,
  "pixel_iou_jaccard": 0.7723,
  "dice": 0.8349,
  "per_iou": [
    {
      "iou": 0.5,
      "tp": 553,
      "fp": 99,
      "fn": 71,
      "precision": 0.8482,
      "recall": 0.8862,
      "f1": 0.8668,
      "AP": 0.7987
    },
    {
      "iou": 0.6,
      "tp": 536,
      "fp": 116,
      "fn": 88,
      "precision": 0.8221,
      "recall": 0.859,
      "f1": 0.8401,
      "AP": 0.7756
    },
    {
      "iou": 0.7,
      "tp": 502,
      "fp": 150,
      "fn": 122,
      "precision": 0.7699,
      "recall": 0.8045,
      "f1": 0.7868,
      "AP": 0.7137
    },
    {
      "iou": 0.8,
      "tp": 431,
      "fp": 221,
      "fn": 193,
      "precision": 0.661,
      "recall": 0.6907,
      "f1": 0.6755,
      "AP": 0.4988
    },
    {
      "iou": 0.9,
      "tp": 213,
      "fp": 439,
      "fn": 411,
      "precision": 0.3267,
      "recall": 0.3413,
      "f1": 0.3339,
      "AP": 0.1892
    }
  ],
  "test_names": [
    "plate1_F19_16.tif",
    "plate2_C07_19.tif",
    "plate2_G24_16.tif",
    "plate2_I07_2.tif",
    "plate5_D07_14.tif",
    "plate6_G23_17.tif",
    "plate6_N12_15.tif",
    "plate7_E09_23.tif",
    "plate7_F17_15.tif",
    "plate7_F18_2.tif",
    "plate7_K07_8.tif"
  ]
}