fold_0/logs.models.fold_0.ENCSR477RTP/logfile.modelling.fold_0.ENCSR477RTP.args.json

{
    "genome": "reference/hg38.genome.fa",
    "bigwig": "/mnt/lab_data2/anusri/chrombpnet/results/chrombpnet/DNASE_SE/IMR90/data/IMR90_unstranded.bw",
    "peaks": "/mnt/lab_data2/anusri/chrombpnet/results/chrombpnet/DNASE_SE/IMR90/DNASE_SE_05.07.2024_fold_0_hep_bias_transfer/chrombpnet_model/filtered.peaks.bed",
    "nonpeaks": "/mnt/lab_data2/anusri/chrombpnet/results/chrombpnet/DNASE_SE/IMR90/DNASE_SE_05.07.2024_fold_0_hep_bias_transfer/chrombpnet_model/filtered.nonpeaks.bed",
    "output_prefix": "/mnt/lab_data2/anusri/chrombpnet/results/chrombpnet/DNASE_SE/IMR90/DNASE_SE_05.07.2024_fold_0_hep_bias_transfer/chrombpnet_model/chrombpnet",
    "chr_fold_path": "/oak/stanford/groups/akundaje/projects/chrombpnet/model_inputs/ENCODE_ATAC_downloads/splits/fold_0.json",
    "trackables": [
        "logcount_predictions_loss",
        "loss",
        "logits_profile_predictions_loss",
        "val_logcount_predictions_loss",
        "val_loss",
        "val_logits_profile_predictions_loss"
    ],
    "epochs": 50,
    "early_stop": 8,
    "batch_size": 64,
    "learning_rate": 0.001,
    "params": "/mnt/lab_data2/anusri/chrombpnet/results/chrombpnet/DNASE_SE/IMR90/DNASE_SE_05.07.2024_fold_0_hep_bias_transfer/chrombpnet_model/chrombpnet_model_params.tsv",
    "seed": 1234,
    "architecture_from_file": "/mnt/lab_data2/anusri/chrombpnet/src/training/models/chrombpnet_with_bias_model.py"
}