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Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.batch_loss.tsv +0 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stderr.txt +38 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stdout.txt +1 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet.params.json +11 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_data_params.tsv +3 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stderr.txt +40 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stdout.txt +1 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_model_params.tsv +9 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt +1 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.epoch_loss.csv +11 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stderr.txt +328 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stdout.txt +0 -0
- fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stdout_v1.txt +0 -0
- fold_0/model.bias_scaled.fold_0.ENCSR050VTC.h5 +3 -0
- fold_0/model.bias_scaled.fold_0.ENCSR050VTC.tar +3 -0
- fold_0/model.chrombpnet.fold_0.ENCSR050VTC.h5 +3 -0
- fold_0/model.chrombpnet.fold_0.ENCSR050VTC.tar +3 -0
- fold_0/model.chrombpnet_nobias.fold_0.ENCSR050VTC.h5 +3 -0
- fold_0/model.chrombpnet_nobias.fold_0.ENCSR050VTC.tar +3 -0
- fold_1/model.bias_scaled.fold_1.ENCSR050VTC.h5 +3 -0
- fold_1/model.bias_scaled.fold_1.ENCSR050VTC.tar +3 -0
- fold_1/model.chrombpnet.fold_1.ENCSR050VTC.h5 +3 -0
- fold_1/model.chrombpnet.fold_1.ENCSR050VTC.tar +3 -0
- fold_1/model.chrombpnet_nobias.fold_1.ENCSR050VTC.h5 +3 -0
- fold_1/model.chrombpnet_nobias.fold_1.ENCSR050VTC.tar +3 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.args.json +23 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stderr.txt +38 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stdout.txt +1 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet.params.json +11 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_data_params.tsv +3 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stderr.txt +40 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stdout.txt +1 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_model_params.tsv +9 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt +1 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.epoch_loss.csv +12 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stderr.txt +328 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stdout.txt +0 -0
- fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stdout_v1.txt +0 -0
- fold_2/model.bias_scaled.fold_2.ENCSR050VTC.h5 +3 -0
- fold_2/model.bias_scaled.fold_2.ENCSR050VTC.tar +3 -0
- fold_2/model.chrombpnet.fold_2.ENCSR050VTC.h5 +3 -0
- fold_2/model.chrombpnet.fold_2.ENCSR050VTC.tar +3 -0
- fold_2/model.chrombpnet_nobias.fold_2.ENCSR050VTC.h5 +3 -0
- fold_2/model.chrombpnet_nobias.fold_2.ENCSR050VTC.tar +3 -0
- fold_3/model.bias_scaled.fold_3.ENCSR050VTC.h5 +3 -0
- fold_3/model.bias_scaled.fold_3.ENCSR050VTC.tar +3 -0
- fold_3/model.chrombpnet.fold_3.ENCSR050VTC.h5 +3 -0
- fold_3/model.chrombpnet.fold_3.ENCSR050VTC.tar +3 -0
- fold_3/model.chrombpnet_nobias.fold_3.ENCSR050VTC.h5 +3 -0
- fold_3/model.chrombpnet_nobias.fold_3.ENCSR050VTC.tar +3 -0
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.batch_loss.tsv
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fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stderr.txt
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INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
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INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
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2023-07-17 00:25:09.149464: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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2023-07-17 00:25:11.446624: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
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2023-07-17 00:25:11.449898: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
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2023-07-17 00:25:12.330166: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
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pciBusID: 0000:c0:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
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coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
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2023-07-17 00:25:12.330260: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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2023-07-17 00:25:12.353099: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
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2023-07-17 00:25:12.353150: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
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2023-07-17 00:25:12.362862: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
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2023-07-17 00:25:12.367332: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
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2023-07-17 00:25:12.382974: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
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2023-07-17 00:25:12.387091: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
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2023-07-17 00:25:12.388003: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
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2023-07-17 00:25:12.414972: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
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2023-07-17 00:25:12.415444: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
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To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
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2023-07-17 00:25:12.416999: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
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2023-07-17 00:25:12.434446: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
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pciBusID: 0000:c0:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
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coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
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2023-07-17 00:25:12.434505: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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2023-07-17 00:25:12.434543: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
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2023-07-17 00:25:12.434571: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
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2023-07-17 00:25:12.434596: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
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2023-07-17 00:25:12.434620: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
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2023-07-17 00:25:12.434644: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
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2023-07-17 00:25:12.434668: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
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2023-07-17 00:25:12.434691: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
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2023-07-17 00:25:12.479592: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
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2023-07-17 00:25:12.481809: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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2023-07-17 00:25:15.020630: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
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2023-07-17 00:25:15.020732: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
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2023-07-17 00:25:15.020744: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
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2023-07-17 00:25:15.027144: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 75650 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-SXM4-80GB, pci bus id: 0000:c0:00.0, compute capability: 8.0)
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2023-07-17 00:25:16.064588: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
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fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stdout.txt
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singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/bias_model_scaled.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/new_model_formats/bias_model_scaled
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fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet.params.json
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{
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"counts_loss_weight": "1.9",
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"filters": "512",
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"n_dil_layers": "8",
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"bias_model_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias/bias_model_scaled.h5",
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"inputlen": "2114",
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"outputlen": "1000",
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"max_jitter": "500",
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"chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_0.json",
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"negative_sampling_ratio": "0.1"
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}
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fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_data_params.tsv
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counts_sum_min_thresh 1.0
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counts_sum_max_thresh 526.0
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trainings_pts_post_thresh 142130
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fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stderr.txt
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INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
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INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
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| 3 |
+
2023-07-17 13:53:01.379151: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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2023-07-17 13:53:04.456414: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
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2023-07-17 13:53:04.462170: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
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2023-07-17 13:53:04.491647: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
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pciBusID: 0000:03:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
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coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
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2023-07-17 13:53:04.491758: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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2023-07-17 13:53:04.520974: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
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2023-07-17 13:53:04.521075: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
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2023-07-17 13:53:04.534981: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
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2023-07-17 13:53:04.541118: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
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2023-07-17 13:53:04.563811: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
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2023-07-17 13:53:04.569743: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
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2023-07-17 13:53:04.570900: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
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2023-07-17 13:53:04.578858: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
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2023-07-17 13:53:04.579188: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
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| 19 |
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To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
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| 20 |
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2023-07-17 13:53:04.580037: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
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| 21 |
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2023-07-17 13:53:04.580291: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
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| 22 |
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pciBusID: 0000:03:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
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| 23 |
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coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
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| 24 |
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2023-07-17 13:53:04.580321: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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2023-07-17 13:53:04.580344: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
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2023-07-17 13:53:04.580366: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
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2023-07-17 13:53:04.580386: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
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2023-07-17 13:53:04.580414: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
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2023-07-17 13:53:04.580436: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
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2023-07-17 13:53:04.580457: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
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2023-07-17 13:53:04.580478: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
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2023-07-17 13:53:04.580821: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
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2023-07-17 13:53:04.582131: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
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| 34 |
+
2023-07-17 13:53:06.441076: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 35 |
+
2023-07-17 13:53:06.441180: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 36 |
+
2023-07-17 13:53:06.441197: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 37 |
+
2023-07-17 13:53:06.444244: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14957 MB memory) -> physical GPU (device: 0, name: Tesla P100-PCIE-16GB, pci bus id: 0000:03:00.0, compute capability: 6.0)
|
| 38 |
+
2023-07-17 13:53:08.847741: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
|
| 39 |
+
/opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
|
| 40 |
+
, UserWarning)
|
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stdout.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/chrombpnet.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/new_model_formats/chrombpnet
|
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_model_params.tsv
ADDED
|
@@ -0,0 +1,9 @@
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|
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|
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|
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|
|
| 1 |
+
counts_loss_weight 1.9
|
| 2 |
+
filters 512
|
| 3 |
+
n_dil_layers 8
|
| 4 |
+
bias_model_path /scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias/bias_model_scaled.h5
|
| 5 |
+
inputlen 2114
|
| 6 |
+
outputlen 1000
|
| 7 |
+
max_jitter 500
|
| 8 |
+
chr_fold_path /scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_0.json
|
| 9 |
+
negative_sampling_ratio 0.1
|
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/chrombpnet_wo_bias.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/new_model_formats/chrombpnet_wo_bias
|
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.epoch_loss.csv
ADDED
|
@@ -0,0 +1,11 @@
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|
| 1 |
+
epoch,logcount_predictions_loss,logits_profile_predictions_loss,loss,val_logcount_predictions_loss,val_logits_profile_predictions_loss,val_loss
|
| 2 |
+
0,1.190574049949646,153.957275390625,156.2194061279297,0.45831894874572754,147.2349090576172,148.105712890625
|
| 3 |
+
1,0.5305262207984924,149.57618713378906,150.5841522216797,0.4049486517906189,146.034912109375,146.8043670654297
|
| 4 |
+
2,0.4761658012866974,148.29525756835938,149.20022583007812,0.40537604689598083,146.39149475097656,147.16177368164062
|
| 5 |
+
3,0.45014017820358276,147.73187255859375,148.5869598388672,0.3792314827442169,145.6910858154297,146.41162109375
|
| 6 |
+
4,0.4292422831058502,147.07583618164062,147.8914794921875,0.3596772253513336,145.35711669921875,146.0404510498047
|
| 7 |
+
5,0.4118763506412506,146.62074279785156,147.40350341796875,0.4108142554759979,145.4069366455078,146.1875
|
| 8 |
+
6,0.40493717789649963,145.98631286621094,146.7556610107422,0.4726986587047577,145.71290588378906,146.61093139648438
|
| 9 |
+
7,0.39594414830207825,145.30691528320312,146.05899047851562,0.3574109673500061,145.4904022216797,146.1694793701172
|
| 10 |
+
8,0.3672647476196289,143.3870086669922,144.0847625732422,0.3332638442516327,145.7316436767578,146.36495971679688
|
| 11 |
+
9,0.3580976724624634,142.0812530517578,142.7616424560547,0.3475518226623535,146.6420135498047,147.3024139404297
|
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stderr.txt
ADDED
|
@@ -0,0 +1,328 @@
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|
|
|
|
| 1 |
+
2022-03-01 17:14:05.510944: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 2 |
+
2022-03-01 17:22:47.465640: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 3 |
+
2022-03-01 17:22:47.467506: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 4 |
+
2022-03-01 17:22:47.504675: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 5 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 6 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 7 |
+
2022-03-01 17:22:47.504785: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 8 |
+
2022-03-01 17:22:47.536032: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 9 |
+
2022-03-01 17:22:47.536227: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 10 |
+
2022-03-01 17:22:47.553337: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 11 |
+
2022-03-01 17:22:47.561421: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 12 |
+
2022-03-01 17:22:47.589273: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 13 |
+
2022-03-01 17:22:47.597101: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 14 |
+
2022-03-01 17:22:47.599098: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 15 |
+
2022-03-01 17:22:47.601695: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 16 |
+
2022-03-01 17:22:47.602223: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 17 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 18 |
+
2022-03-01 17:22:47.602354: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 19 |
+
2022-03-01 17:22:47.602876: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 20 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 21 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 22 |
+
2022-03-01 17:22:47.602936: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 23 |
+
2022-03-01 17:22:47.602978: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 24 |
+
2022-03-01 17:22:47.603004: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 25 |
+
2022-03-01 17:22:47.603029: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 26 |
+
2022-03-01 17:22:47.603053: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 27 |
+
2022-03-01 17:22:47.603078: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 28 |
+
2022-03-01 17:22:47.603103: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 29 |
+
2022-03-01 17:22:47.603128: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 30 |
+
2022-03-01 17:22:47.603656: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 31 |
+
2022-03-01 17:22:47.605674: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 32 |
+
2022-03-01 17:22:49.722974: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 33 |
+
2022-03-01 17:22:49.723095: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 34 |
+
2022-03-01 17:22:49.723117: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 35 |
+
2022-03-01 17:22:49.728979: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
|
| 36 |
+
2022-03-01 17:22:51.363247: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 37 |
+
2022-03-01 17:22:51.374337: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
|
| 38 |
+
2022-03-01 17:22:51.659902: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 39 |
+
2022-03-01 17:22:53.070441: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 40 |
+
2022-03-01 17:22:53.080939: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 41 |
+
2022-03-01 17:23:33.888193: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 42 |
+
2022-03-01 17:23:36.420756: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 43 |
+
2022-03-01 17:23:36.421951: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 44 |
+
2022-03-01 17:23:36.464684: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 45 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 46 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 47 |
+
2022-03-01 17:23:36.464780: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 48 |
+
2022-03-01 17:23:36.468210: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 49 |
+
2022-03-01 17:23:36.468374: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 50 |
+
2022-03-01 17:23:36.469965: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 51 |
+
2022-03-01 17:23:36.470372: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 52 |
+
2022-03-01 17:23:36.473912: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 53 |
+
2022-03-01 17:23:36.474808: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 54 |
+
2022-03-01 17:23:36.475005: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 55 |
+
2022-03-01 17:23:36.475716: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 56 |
+
2022-03-01 17:23:36.476141: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 57 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 58 |
+
2022-03-01 17:23:36.476251: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 59 |
+
2022-03-01 17:23:36.476616: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 60 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 61 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 62 |
+
2022-03-01 17:23:36.476690: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 63 |
+
2022-03-01 17:23:36.476737: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 64 |
+
2022-03-01 17:23:36.476762: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 65 |
+
2022-03-01 17:23:36.476786: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 66 |
+
2022-03-01 17:23:36.476820: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 67 |
+
2022-03-01 17:23:36.476844: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 68 |
+
2022-03-01 17:23:36.476867: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 69 |
+
2022-03-01 17:23:36.476890: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 70 |
+
2022-03-01 17:23:36.477425: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 71 |
+
2022-03-01 17:23:36.477474: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 72 |
+
2022-03-01 17:23:37.150712: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 73 |
+
2022-03-01 17:23:37.150835: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 74 |
+
2022-03-01 17:23:37.150854: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 75 |
+
2022-03-01 17:23:37.151974: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
|
| 76 |
+
2022-03-01 17:30:41.390745: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 77 |
+
2022-03-01 17:30:41.391426: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
|
| 78 |
+
2022-03-01 17:30:43.945634: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 79 |
+
2022-03-01 17:30:48.170363: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 80 |
+
2022-03-01 17:30:48.193246: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 81 |
+
WARNING:tensorflow:Callback method `on_train_batch_end` is slow compared to the batch time (batch time: 0.1809s vs `on_train_batch_end` time: 0.2536s). Check your callbacks.
|
| 82 |
+
2022-03-01 20:23:17.795576: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 83 |
+
2022-03-01 20:23:21.437018: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 84 |
+
2022-03-01 20:23:21.438176: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 85 |
+
2022-03-01 20:23:21.484002: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 86 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 87 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 88 |
+
2022-03-01 20:23:21.484099: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 89 |
+
2022-03-01 20:23:21.487468: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 90 |
+
2022-03-01 20:23:21.487544: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 91 |
+
2022-03-01 20:23:21.488983: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 92 |
+
2022-03-01 20:23:21.489235: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 93 |
+
2022-03-01 20:23:21.492659: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 94 |
+
2022-03-01 20:23:21.493414: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 95 |
+
2022-03-01 20:23:21.493593: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 96 |
+
2022-03-01 20:23:21.494302: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 97 |
+
2022-03-01 20:23:21.494693: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 98 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 99 |
+
2022-03-01 20:23:21.494802: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 100 |
+
2022-03-01 20:23:21.495152: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 101 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 102 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 103 |
+
2022-03-01 20:23:21.495187: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 104 |
+
2022-03-01 20:23:21.495216: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 105 |
+
2022-03-01 20:23:21.495243: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 106 |
+
2022-03-01 20:23:21.495269: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 107 |
+
2022-03-01 20:23:21.495294: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 108 |
+
2022-03-01 20:23:21.495320: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 109 |
+
2022-03-01 20:23:21.495346: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 110 |
+
2022-03-01 20:23:21.495372: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 111 |
+
2022-03-01 20:23:21.495945: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 112 |
+
2022-03-01 20:23:21.495989: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 113 |
+
2022-03-01 20:23:22.150106: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 114 |
+
2022-03-01 20:23:22.150208: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 115 |
+
2022-03-01 20:23:22.150227: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 116 |
+
2022-03-01 20:23:22.151329: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
|
| 117 |
+
2022-03-01 20:25:19.724219: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 118 |
+
2022-03-01 20:25:19.729063: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
|
| 119 |
+
2022-03-01 20:25:19.855309: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 120 |
+
2022-03-01 20:25:20.159056: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 121 |
+
2022-03-01 20:25:20.161765: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 122 |
+
/opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
|
| 123 |
+
, UserWarning)
|
| 124 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
|
| 125 |
+
cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
|
| 126 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
|
| 127 |
+
profile_prob = profile / np.sum(profile)
|
| 128 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
|
| 129 |
+
shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
|
| 130 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
|
| 131 |
+
curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
|
| 132 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 133 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 134 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 135 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 136 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 137 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 138 |
+
2022-03-01 20:29:55.091923: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 139 |
+
2022-03-01 20:29:58.348494: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 140 |
+
2022-03-01 20:29:58.349650: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 141 |
+
2022-03-01 20:29:58.404307: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 142 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 143 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 144 |
+
2022-03-01 20:29:58.404404: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 145 |
+
2022-03-01 20:29:58.407800: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 146 |
+
2022-03-01 20:29:58.407866: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 147 |
+
2022-03-01 20:29:58.409281: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 148 |
+
2022-03-01 20:29:58.409532: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 149 |
+
2022-03-01 20:29:58.412925: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 150 |
+
2022-03-01 20:29:58.413674: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 151 |
+
2022-03-01 20:29:58.413863: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 152 |
+
2022-03-01 20:29:58.414531: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 153 |
+
2022-03-01 20:29:58.414928: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 154 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 155 |
+
2022-03-01 20:29:58.415044: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 156 |
+
2022-03-01 20:29:58.415374: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 157 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 158 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 159 |
+
2022-03-01 20:29:58.415409: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 160 |
+
2022-03-01 20:29:58.415444: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 161 |
+
2022-03-01 20:29:58.415476: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 162 |
+
2022-03-01 20:29:58.415507: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 163 |
+
2022-03-01 20:29:58.415537: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 164 |
+
2022-03-01 20:29:58.415567: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 165 |
+
2022-03-01 20:29:58.415597: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 166 |
+
2022-03-01 20:29:58.415627: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 167 |
+
2022-03-01 20:29:58.416192: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 168 |
+
2022-03-01 20:29:58.416236: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 169 |
+
2022-03-01 20:29:59.061949: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 170 |
+
2022-03-01 20:29:59.062047: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 171 |
+
2022-03-01 20:29:59.062068: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 172 |
+
2022-03-01 20:29:59.063143: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
|
| 173 |
+
WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
|
| 174 |
+
2022-03-01 20:31:41.307453: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 175 |
+
2022-03-01 20:31:41.310666: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
|
| 176 |
+
2022-03-01 20:31:41.395053: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 177 |
+
2022-03-01 20:31:41.701934: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 178 |
+
2022-03-01 20:31:41.703938: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 179 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
|
| 180 |
+
cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
|
| 181 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
|
| 182 |
+
profile_prob = profile / np.sum(profile)
|
| 183 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
|
| 184 |
+
shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
|
| 185 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
|
| 186 |
+
curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
|
| 187 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 188 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 189 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 190 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 191 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 192 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 193 |
+
2022-03-01 20:36:01.216363: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 194 |
+
2022-03-01 20:36:04.705844: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 195 |
+
2022-03-01 20:36:04.707008: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 196 |
+
2022-03-01 20:36:04.753041: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 197 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 198 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 199 |
+
2022-03-01 20:36:04.753135: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 200 |
+
2022-03-01 20:36:04.756516: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 201 |
+
2022-03-01 20:36:04.756587: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 202 |
+
2022-03-01 20:36:04.758006: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 203 |
+
2022-03-01 20:36:04.758255: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 204 |
+
2022-03-01 20:36:04.761701: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 205 |
+
2022-03-01 20:36:04.762446: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 206 |
+
2022-03-01 20:36:04.762627: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 207 |
+
2022-03-01 20:36:04.763327: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 208 |
+
2022-03-01 20:36:04.763719: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 209 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 210 |
+
2022-03-01 20:36:04.763824: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 211 |
+
2022-03-01 20:36:04.764154: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 212 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 213 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 214 |
+
2022-03-01 20:36:04.764187: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 215 |
+
2022-03-01 20:36:04.764216: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 216 |
+
2022-03-01 20:36:04.764241: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 217 |
+
2022-03-01 20:36:04.764288: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 218 |
+
2022-03-01 20:36:04.764316: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 219 |
+
2022-03-01 20:36:04.764341: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 220 |
+
2022-03-01 20:36:04.764366: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 221 |
+
2022-03-01 20:36:04.764390: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 222 |
+
2022-03-01 20:36:04.764953: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 223 |
+
2022-03-01 20:36:04.764997: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 224 |
+
2022-03-01 20:36:05.426292: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 225 |
+
2022-03-01 20:36:05.426370: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 226 |
+
2022-03-01 20:36:05.426389: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 227 |
+
2022-03-01 20:36:05.427491: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
|
| 228 |
+
2022-03-01 20:37:47.947554: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 229 |
+
2022-03-01 20:37:47.949885: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
|
| 230 |
+
2022-03-01 20:37:48.003553: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 231 |
+
2022-03-01 20:37:48.303766: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 232 |
+
2022-03-01 20:37:48.305849: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 233 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
|
| 234 |
+
cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
|
| 235 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
|
| 236 |
+
profile_prob = profile / np.sum(profile)
|
| 237 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
|
| 238 |
+
shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
|
| 239 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
|
| 240 |
+
curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
|
| 241 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 242 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 243 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 244 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 245 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 246 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 247 |
+
2022-03-01 20:39:21.463929: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 248 |
+
2022-03-01 20:39:23.107943: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 249 |
+
2022-03-01 20:39:23.109392: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 250 |
+
2022-03-01 20:39:23.156578: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 251 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 252 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 253 |
+
2022-03-01 20:39:23.156680: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 254 |
+
2022-03-01 20:39:23.160031: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 255 |
+
2022-03-01 20:39:23.160101: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 256 |
+
2022-03-01 20:39:23.161503: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 257 |
+
2022-03-01 20:39:23.161756: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 258 |
+
2022-03-01 20:39:23.165175: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 259 |
+
2022-03-01 20:39:23.165908: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 260 |
+
2022-03-01 20:39:23.166086: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 261 |
+
2022-03-01 20:39:23.166731: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 262 |
+
2022-03-01 20:39:23.167148: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 263 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 264 |
+
2022-03-01 20:39:23.167238: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 265 |
+
2022-03-01 20:39:23.167571: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 266 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 267 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 268 |
+
2022-03-01 20:39:23.167612: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 269 |
+
2022-03-01 20:39:23.167641: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 270 |
+
2022-03-01 20:39:23.167668: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 271 |
+
2022-03-01 20:39:23.167694: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 272 |
+
2022-03-01 20:39:23.167720: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 273 |
+
2022-03-01 20:39:23.167746: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 274 |
+
2022-03-01 20:39:23.167772: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 275 |
+
2022-03-01 20:39:23.167807: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 276 |
+
2022-03-01 20:39:23.168328: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 277 |
+
2022-03-01 20:39:23.168376: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 278 |
+
2022-03-01 20:39:23.830574: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 279 |
+
2022-03-01 20:39:23.830692: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 280 |
+
2022-03-01 20:39:23.830713: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 281 |
+
2022-03-01 20:39:23.831757: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
|
| 282 |
+
WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
|
| 283 |
+
2022-03-01 20:39:43.257628: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 284 |
+
2022-03-01 20:39:43.258306: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
|
| 285 |
+
2022-03-01 20:39:43.551551: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 286 |
+
2022-03-01 20:39:43.941018: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 287 |
+
2022-03-01 20:39:43.943357: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 288 |
+
mkdir: cannot create directory ‘/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias//footprints’: File exists
|
| 289 |
+
2022-03-01 20:42:52.023498: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 290 |
+
2022-03-01 20:42:53.659360: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 291 |
+
2022-03-01 20:42:53.660499: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 292 |
+
2022-03-01 20:42:53.706954: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 293 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 294 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 295 |
+
2022-03-01 20:42:53.707055: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 296 |
+
2022-03-01 20:42:53.710417: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 297 |
+
2022-03-01 20:42:53.710485: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 298 |
+
2022-03-01 20:42:53.711893: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 299 |
+
2022-03-01 20:42:53.712145: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 300 |
+
2022-03-01 20:42:53.715579: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 301 |
+
2022-03-01 20:42:53.716323: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 302 |
+
2022-03-01 20:42:53.716507: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 303 |
+
2022-03-01 20:42:53.717177: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 304 |
+
2022-03-01 20:42:53.717550: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 305 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 306 |
+
2022-03-01 20:42:53.717642: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 307 |
+
2022-03-01 20:42:53.717978: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 308 |
+
pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
|
| 309 |
+
coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
|
| 310 |
+
2022-03-01 20:42:53.718044: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 311 |
+
2022-03-01 20:42:53.718087: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 312 |
+
2022-03-01 20:42:53.718118: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 313 |
+
2022-03-01 20:42:53.718148: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 314 |
+
2022-03-01 20:42:53.718178: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 315 |
+
2022-03-01 20:42:53.718207: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 316 |
+
2022-03-01 20:42:53.718237: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 317 |
+
2022-03-01 20:42:53.718267: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 318 |
+
2022-03-01 20:42:53.718844: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 319 |
+
2022-03-01 20:42:53.718900: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 320 |
+
2022-03-01 20:42:54.388093: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 321 |
+
2022-03-01 20:42:54.388191: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 322 |
+
2022-03-01 20:42:54.388210: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 323 |
+
2022-03-01 20:42:54.389258: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
|
| 324 |
+
2022-03-01 20:43:13.465308: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 325 |
+
2022-03-01 20:43:13.465952: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
|
| 326 |
+
2022-03-01 20:43:13.670476: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 327 |
+
2022-03-01 20:43:14.073192: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 328 |
+
2022-03-01 20:43:14.075493: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stdout.txt
ADDED
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fold_0/model.bias_scaled.fold_0.ENCSR050VTC.h5
ADDED
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fold_0/model.bias_scaled.fold_0.ENCSR050VTC.tar
ADDED
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version https://git-lfs.github.com/spec/v1
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fold_0/model.chrombpnet.fold_0.ENCSR050VTC.h5
ADDED
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version https://git-lfs.github.com/spec/v1
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size 26448016
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fold_0/model.chrombpnet.fold_0.ENCSR050VTC.tar
ADDED
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version https://git-lfs.github.com/spec/v1
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size 27617280
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fold_0/model.chrombpnet_nobias.fold_0.ENCSR050VTC.h5
ADDED
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version https://git-lfs.github.com/spec/v1
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size 25583536
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fold_0/model.chrombpnet_nobias.fold_0.ENCSR050VTC.tar
ADDED
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version https://git-lfs.github.com/spec/v1
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size 26081280
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fold_1/model.bias_scaled.fold_1.ENCSR050VTC.h5
ADDED
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version https://git-lfs.github.com/spec/v1
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oid sha256:ce94034125fa0b6f84439efc040cd870214f8ca9fb062391de529893da1170eb
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size 2688440
|
fold_1/model.bias_scaled.fold_1.ENCSR050VTC.tar
ADDED
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version https://git-lfs.github.com/spec/v1
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oid sha256:28d3e095cf06a5db2d774749a7a0079d6dd7af041020f7e953589c5978e5f1e1
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size 1198080
|
fold_1/model.chrombpnet.fold_1.ENCSR050VTC.h5
ADDED
|
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version https://git-lfs.github.com/spec/v1
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oid sha256:b489770e4be23dc0312d8651599c777b11997669704e1252500e16fcf7f7c43d
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size 26447928
|
fold_1/model.chrombpnet.fold_1.ENCSR050VTC.tar
ADDED
|
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version https://git-lfs.github.com/spec/v1
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oid sha256:0ccf315dfae8a32994613766291d8ee0ec007770dd3eaa504b0ab8cff2d8730a
|
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size 27607040
|
fold_1/model.chrombpnet_nobias.fold_1.ENCSR050VTC.h5
ADDED
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+
version https://git-lfs.github.com/spec/v1
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oid sha256:3ef1ab79b17e30f6d8b3537441e7d358250a9727f9746ddc269aed295dcb1b7a
|
| 3 |
+
size 25583536
|
fold_1/model.chrombpnet_nobias.fold_1.ENCSR050VTC.tar
ADDED
|
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+
version https://git-lfs.github.com/spec/v1
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oid sha256:c7388be50e3e2e97827e4b31e0788996c02b3e427dc3823c1cc7aef7ca1c97aa
|
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+
size 26081280
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.args.json
ADDED
|
@@ -0,0 +1,23 @@
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"genome": "/scratch/groups/akundaje/anusri/chromatin_atlas/reference/hg38.genome.fa",
|
| 3 |
+
"bigwig": "/oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//preprocessing/bigWigs/ENCSR050VTC.bigWig",
|
| 4 |
+
"peaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//filtered.peaks.bed",
|
| 5 |
+
"nonpeaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//filtered.nonpeaks.bed",
|
| 6 |
+
"output_prefix": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//chrombpnet",
|
| 7 |
+
"chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_2.json",
|
| 8 |
+
"trackables": [
|
| 9 |
+
"logcount_predictions_loss",
|
| 10 |
+
"loss",
|
| 11 |
+
"logits_profile_predictions_loss",
|
| 12 |
+
"val_logcount_predictions_loss",
|
| 13 |
+
"val_loss",
|
| 14 |
+
"val_logits_profile_predictions_loss"
|
| 15 |
+
],
|
| 16 |
+
"epochs": 50,
|
| 17 |
+
"early_stop": 5,
|
| 18 |
+
"batch_size": 64,
|
| 19 |
+
"learning_rate": 0.001,
|
| 20 |
+
"params": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//chrombpnet_model_params.tsv",
|
| 21 |
+
"seed": 1234,
|
| 22 |
+
"architecture_from_file": "/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/models/chrombpnet_with_bias_model.py"
|
| 23 |
+
}
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stderr.txt
ADDED
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| 1 |
+
INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
|
| 2 |
+
INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
|
| 3 |
+
2023-07-17 00:25:09.068312: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 4 |
+
2023-07-17 00:25:11.374869: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 5 |
+
2023-07-17 00:25:11.379454: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 6 |
+
2023-07-17 00:25:11.974594: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 7 |
+
pciBusID: 0000:4b:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
|
| 8 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
|
| 9 |
+
2023-07-17 00:25:11.974731: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 10 |
+
2023-07-17 00:25:11.996253: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 11 |
+
2023-07-17 00:25:11.996313: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 12 |
+
2023-07-17 00:25:12.005654: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 13 |
+
2023-07-17 00:25:12.010303: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 14 |
+
2023-07-17 00:25:12.026747: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 15 |
+
2023-07-17 00:25:12.031172: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 16 |
+
2023-07-17 00:25:12.032138: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 17 |
+
2023-07-17 00:25:12.044531: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 18 |
+
2023-07-17 00:25:12.044920: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 19 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 20 |
+
2023-07-17 00:25:12.046155: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 21 |
+
2023-07-17 00:25:12.069891: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 22 |
+
pciBusID: 0000:4b:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
|
| 23 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
|
| 24 |
+
2023-07-17 00:25:12.069937: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 25 |
+
2023-07-17 00:25:12.069986: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 26 |
+
2023-07-17 00:25:12.070013: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 27 |
+
2023-07-17 00:25:12.070035: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 28 |
+
2023-07-17 00:25:12.070055: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 29 |
+
2023-07-17 00:25:12.070075: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 30 |
+
2023-07-17 00:25:12.070094: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 31 |
+
2023-07-17 00:25:12.070113: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 32 |
+
2023-07-17 00:25:12.102078: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 33 |
+
2023-07-17 00:25:12.104498: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 34 |
+
2023-07-17 00:25:15.152196: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 35 |
+
2023-07-17 00:25:15.152342: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 36 |
+
2023-07-17 00:25:15.152355: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 37 |
+
2023-07-17 00:25:15.194939: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 75650 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-SXM4-80GB, pci bus id: 0000:4b:00.0, compute capability: 8.0)
|
| 38 |
+
2023-07-17 00:25:16.318444: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stdout.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
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| 1 |
+
singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/bias_model_scaled.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/new_model_formats/bias_model_scaled
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet.params.json
ADDED
|
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|
| 1 |
+
{
|
| 2 |
+
"counts_loss_weight": "1.9",
|
| 3 |
+
"filters": "512",
|
| 4 |
+
"n_dil_layers": "8",
|
| 5 |
+
"bias_model_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/bias_model_scaled.h5",
|
| 6 |
+
"inputlen": "2114",
|
| 7 |
+
"outputlen": "1000",
|
| 8 |
+
"max_jitter": "500",
|
| 9 |
+
"chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_2.json",
|
| 10 |
+
"negative_sampling_ratio": "0.1"
|
| 11 |
+
}
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_data_params.tsv
ADDED
|
@@ -0,0 +1,3 @@
|
|
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|
|
|
|
|
|
|
|
|
|
| 1 |
+
counts_sum_min_thresh 1.0
|
| 2 |
+
counts_sum_max_thresh 524.0
|
| 3 |
+
trainings_pts_post_thresh 149901
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stderr.txt
ADDED
|
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|
| 1 |
+
INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
|
| 2 |
+
INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
|
| 3 |
+
2023-07-17 13:53:01.409124: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 4 |
+
2023-07-17 13:53:04.529437: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 5 |
+
2023-07-17 13:53:04.535261: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 6 |
+
2023-07-17 13:53:04.576871: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 7 |
+
pciBusID: 0000:04:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
|
| 8 |
+
coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
|
| 9 |
+
2023-07-17 13:53:04.576936: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 10 |
+
2023-07-17 13:53:04.608006: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 11 |
+
2023-07-17 13:53:04.608188: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 12 |
+
2023-07-17 13:53:04.624199: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 13 |
+
2023-07-17 13:53:04.630772: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 14 |
+
2023-07-17 13:53:04.654354: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 15 |
+
2023-07-17 13:53:04.660141: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 16 |
+
2023-07-17 13:53:04.661334: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 17 |
+
2023-07-17 13:53:04.667176: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 18 |
+
2023-07-17 13:53:04.667583: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 19 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 20 |
+
2023-07-17 13:53:04.668519: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 21 |
+
2023-07-17 13:53:04.685264: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 22 |
+
pciBusID: 0000:04:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
|
| 23 |
+
coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
|
| 24 |
+
2023-07-17 13:53:04.685395: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 25 |
+
2023-07-17 13:53:04.685465: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 26 |
+
2023-07-17 13:53:04.685495: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 27 |
+
2023-07-17 13:53:04.685522: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 28 |
+
2023-07-17 13:53:04.685548: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 29 |
+
2023-07-17 13:53:04.685575: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 30 |
+
2023-07-17 13:53:04.685601: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 31 |
+
2023-07-17 13:53:04.685627: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 32 |
+
2023-07-17 13:53:04.686609: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 33 |
+
2023-07-17 13:53:04.688122: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 34 |
+
2023-07-17 13:53:06.555486: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 35 |
+
2023-07-17 13:53:06.555593: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 36 |
+
2023-07-17 13:53:06.555611: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 37 |
+
2023-07-17 13:53:06.575883: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14957 MB memory) -> physical GPU (device: 0, name: Tesla P100-PCIE-16GB, pci bus id: 0000:04:00.0, compute capability: 6.0)
|
| 38 |
+
2023-07-17 13:53:08.968483: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
|
| 39 |
+
/opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
|
| 40 |
+
, UserWarning)
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stdout.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/chrombpnet.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/new_model_formats/chrombpnet
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_model_params.tsv
ADDED
|
@@ -0,0 +1,9 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
counts_loss_weight 1.9
|
| 2 |
+
filters 512
|
| 3 |
+
n_dil_layers 8
|
| 4 |
+
bias_model_path /scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/bias_model_scaled.h5
|
| 5 |
+
inputlen 2114
|
| 6 |
+
outputlen 1000
|
| 7 |
+
max_jitter 500
|
| 8 |
+
chr_fold_path /scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_2.json
|
| 9 |
+
negative_sampling_ratio 0.1
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt
ADDED
|
@@ -0,0 +1 @@
|
|
|
|
|
|
|
| 1 |
+
singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/chrombpnet_wo_bias.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/new_model_formats/chrombpnet_wo_bias
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.epoch_loss.csv
ADDED
|
@@ -0,0 +1,12 @@
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
epoch,logcount_predictions_loss,logits_profile_predictions_loss,loss,val_logcount_predictions_loss,val_logits_profile_predictions_loss,val_loss
|
| 2 |
+
0,1.205910563468933,152.8164520263672,155.1073760986328,0.5932305455207825,155.01309204101562,156.14022827148438
|
| 3 |
+
1,0.5178511142730713,148.947021484375,149.93096923828125,0.5029187798500061,154.33303833007812,155.28855895996094
|
| 4 |
+
2,0.4798010289669037,147.82803344726562,148.73977661132812,0.4240909516811371,153.30987548828125,154.11561584472656
|
| 5 |
+
3,0.4570019841194153,146.9898681640625,147.85801696777344,0.4530564844608307,153.67520141601562,154.53599548339844
|
| 6 |
+
4,0.4369247853755951,146.5171661376953,147.3473358154297,0.40781861543655396,153.3402862548828,154.11514282226562
|
| 7 |
+
5,0.42232203483581543,145.82777404785156,146.6301727294922,0.4057151675224304,153.0992889404297,153.8702392578125
|
| 8 |
+
6,0.4125921130180359,145.32211303710938,146.10595703125,0.404712438583374,153.3608856201172,154.12989807128906
|
| 9 |
+
7,0.4018162488937378,144.77862548828125,145.54185485839844,0.38635125756263733,153.39111328125,154.12521362304688
|
| 10 |
+
8,0.3917403221130371,144.48004150390625,145.22406005859375,0.3898344039916992,154.0139617919922,154.75466918945312
|
| 11 |
+
9,0.3641541004180908,142.4712677001953,143.16302490234375,0.3753404915332794,153.67303466796875,154.38616943359375
|
| 12 |
+
10,0.35608306527137756,141.34388732910156,142.02032470703125,0.3709629774093628,154.35549926757812,155.0602569580078
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stderr.txt
ADDED
|
@@ -0,0 +1,328 @@
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|
|
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|
|
|
|
|
| 1 |
+
2022-10-04 22:03:17.116581: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 2 |
+
2022-10-04 22:07:32.914339: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 3 |
+
2022-10-04 22:07:32.915550: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 4 |
+
2022-10-04 22:07:33.036644: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 5 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 6 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 7 |
+
2022-10-04 22:07:33.136024: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 8 |
+
2022-10-04 22:07:33.162031: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 9 |
+
2022-10-04 22:07:33.162156: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 10 |
+
2022-10-04 22:07:33.175455: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 11 |
+
2022-10-04 22:07:33.181640: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 12 |
+
2022-10-04 22:07:33.203084: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 13 |
+
2022-10-04 22:07:33.209143: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 14 |
+
2022-10-04 22:07:33.210580: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 15 |
+
2022-10-04 22:07:33.215531: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 16 |
+
2022-10-04 22:07:33.215889: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 17 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 18 |
+
2022-10-04 22:07:33.215960: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 19 |
+
2022-10-04 22:07:33.217595: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 20 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 21 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 22 |
+
2022-10-04 22:07:33.217628: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 23 |
+
2022-10-04 22:07:33.217650: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 24 |
+
2022-10-04 22:07:33.217666: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 25 |
+
2022-10-04 22:07:33.217680: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 26 |
+
2022-10-04 22:07:33.217694: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 27 |
+
2022-10-04 22:07:33.217708: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 28 |
+
2022-10-04 22:07:33.217721: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 29 |
+
2022-10-04 22:07:33.217735: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 30 |
+
2022-10-04 22:07:33.220903: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 31 |
+
2022-10-04 22:07:33.222446: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 32 |
+
2022-10-04 22:07:34.885051: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 33 |
+
2022-10-04 22:07:34.885140: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 34 |
+
2022-10-04 22:07:34.885153: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 35 |
+
2022-10-04 22:07:34.893327: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
|
| 36 |
+
2022-10-04 22:07:36.133083: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 37 |
+
2022-10-04 22:07:36.141794: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
|
| 38 |
+
2022-10-04 22:07:36.330137: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 39 |
+
2022-10-04 22:07:37.844488: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 40 |
+
2022-10-04 22:07:37.852814: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 41 |
+
2022-10-04 22:08:05.855300: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 42 |
+
2022-10-04 22:08:07.495301: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 43 |
+
2022-10-04 22:08:07.496092: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 44 |
+
2022-10-04 22:08:07.573106: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 45 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 46 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 47 |
+
2022-10-04 22:08:07.573193: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 48 |
+
2022-10-04 22:08:07.575385: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 49 |
+
2022-10-04 22:08:07.575483: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 50 |
+
2022-10-04 22:08:07.576490: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 51 |
+
2022-10-04 22:08:07.576703: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 52 |
+
2022-10-04 22:08:07.579078: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 53 |
+
2022-10-04 22:08:07.579630: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 54 |
+
2022-10-04 22:08:07.579765: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 55 |
+
2022-10-04 22:08:07.581479: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 56 |
+
2022-10-04 22:08:07.581807: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 57 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 58 |
+
2022-10-04 22:08:07.581876: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 59 |
+
2022-10-04 22:08:07.582719: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 60 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 61 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 62 |
+
2022-10-04 22:08:07.582760: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 63 |
+
2022-10-04 22:08:07.582782: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 64 |
+
2022-10-04 22:08:07.582798: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 65 |
+
2022-10-04 22:08:07.582813: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 66 |
+
2022-10-04 22:08:07.582827: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 67 |
+
2022-10-04 22:08:07.582842: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 68 |
+
2022-10-04 22:08:07.582855: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 69 |
+
2022-10-04 22:08:07.582870: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 70 |
+
2022-10-04 22:08:07.584440: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 71 |
+
2022-10-04 22:08:07.584472: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 72 |
+
2022-10-04 22:08:08.071356: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 73 |
+
2022-10-04 22:08:08.071451: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 74 |
+
2022-10-04 22:08:08.071464: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 75 |
+
2022-10-04 22:08:08.074269: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
|
| 76 |
+
2022-10-04 22:12:26.128310: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 77 |
+
2022-10-04 22:12:26.128735: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
|
| 78 |
+
2022-10-04 22:12:27.520204: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 79 |
+
2022-10-04 22:12:27.999126: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 80 |
+
2022-10-04 22:12:28.015163: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 81 |
+
2022-10-04 22:12:31.382883: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once.
|
| 82 |
+
2022-10-04 23:19:30.533121: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 83 |
+
2022-10-04 23:19:33.102603: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 84 |
+
2022-10-04 23:19:33.103420: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 85 |
+
2022-10-04 23:19:33.182133: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 86 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 87 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 88 |
+
2022-10-04 23:19:33.182219: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 89 |
+
2022-10-04 23:19:33.184365: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 90 |
+
2022-10-04 23:19:33.184413: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 91 |
+
2022-10-04 23:19:33.185394: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 92 |
+
2022-10-04 23:19:33.185579: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 93 |
+
2022-10-04 23:19:33.187830: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 94 |
+
2022-10-04 23:19:33.188320: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 95 |
+
2022-10-04 23:19:33.188446: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 96 |
+
2022-10-04 23:19:33.190146: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 97 |
+
2022-10-04 23:19:33.190468: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 98 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 99 |
+
2022-10-04 23:19:33.190536: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 100 |
+
2022-10-04 23:19:33.191389: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 101 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 102 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 103 |
+
2022-10-04 23:19:33.191411: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 104 |
+
2022-10-04 23:19:33.191428: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 105 |
+
2022-10-04 23:19:33.191443: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 106 |
+
2022-10-04 23:19:33.191457: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 107 |
+
2022-10-04 23:19:33.191471: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 108 |
+
2022-10-04 23:19:33.191485: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 109 |
+
2022-10-04 23:19:33.191498: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 110 |
+
2022-10-04 23:19:33.191512: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 111 |
+
2022-10-04 23:19:33.193103: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 112 |
+
2022-10-04 23:19:33.193132: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 113 |
+
2022-10-04 23:19:33.662052: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 114 |
+
2022-10-04 23:19:33.662139: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 115 |
+
2022-10-04 23:19:33.662151: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 116 |
+
2022-10-04 23:19:33.665197: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
|
| 117 |
+
2022-10-04 23:20:32.162186: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 118 |
+
2022-10-04 23:20:32.165810: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
|
| 119 |
+
2022-10-04 23:20:32.252273: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 120 |
+
2022-10-04 23:20:32.730843: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 121 |
+
2022-10-04 23:20:32.733036: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 122 |
+
/opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
|
| 123 |
+
, UserWarning)
|
| 124 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
|
| 125 |
+
cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
|
| 126 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
|
| 127 |
+
profile_prob = profile / np.sum(profile)
|
| 128 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
|
| 129 |
+
shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
|
| 130 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
|
| 131 |
+
curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
|
| 132 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 133 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 134 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 135 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 136 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 137 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 138 |
+
2022-10-04 23:22:21.739970: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 139 |
+
2022-10-04 23:22:24.107091: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 140 |
+
2022-10-04 23:22:24.107897: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 141 |
+
2022-10-04 23:22:24.186041: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 142 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 143 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 144 |
+
2022-10-04 23:22:24.186117: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 145 |
+
2022-10-04 23:22:24.188300: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 146 |
+
2022-10-04 23:22:24.188371: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 147 |
+
2022-10-04 23:22:24.189380: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 148 |
+
2022-10-04 23:22:24.189573: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 149 |
+
2022-10-04 23:22:24.191856: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 150 |
+
2022-10-04 23:22:24.192352: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 151 |
+
2022-10-04 23:22:24.192484: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 152 |
+
2022-10-04 23:22:24.194206: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 153 |
+
2022-10-04 23:22:24.194528: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 154 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 155 |
+
2022-10-04 23:22:24.194626: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 156 |
+
2022-10-04 23:22:24.195477: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 157 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 158 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 159 |
+
2022-10-04 23:22:24.195499: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 160 |
+
2022-10-04 23:22:24.195517: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 161 |
+
2022-10-04 23:22:24.195532: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 162 |
+
2022-10-04 23:22:24.195547: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 163 |
+
2022-10-04 23:22:24.195560: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 164 |
+
2022-10-04 23:22:24.195580: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 165 |
+
2022-10-04 23:22:24.195594: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 166 |
+
2022-10-04 23:22:24.195608: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 167 |
+
2022-10-04 23:22:24.197191: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 168 |
+
2022-10-04 23:22:24.197222: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 169 |
+
2022-10-04 23:22:24.668385: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 170 |
+
2022-10-04 23:22:24.668476: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 171 |
+
2022-10-04 23:22:24.668489: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 172 |
+
2022-10-04 23:22:24.672682: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
|
| 173 |
+
WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
|
| 174 |
+
2022-10-04 23:23:16.033827: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 175 |
+
2022-10-04 23:23:16.036244: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
|
| 176 |
+
2022-10-04 23:23:16.094761: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 177 |
+
2022-10-04 23:23:16.576024: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 178 |
+
2022-10-04 23:23:21.638027: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 179 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
|
| 180 |
+
cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
|
| 181 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
|
| 182 |
+
profile_prob = profile / np.sum(profile)
|
| 183 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
|
| 184 |
+
shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
|
| 185 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
|
| 186 |
+
curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
|
| 187 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 188 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 189 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 190 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 191 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 192 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 193 |
+
2022-10-04 23:25:05.703184: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 194 |
+
2022-10-04 23:25:08.165590: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 195 |
+
2022-10-04 23:25:08.166399: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 196 |
+
2022-10-04 23:25:08.245806: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 197 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 198 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 199 |
+
2022-10-04 23:25:08.245891: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 200 |
+
2022-10-04 23:25:08.248036: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 201 |
+
2022-10-04 23:25:08.248086: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 202 |
+
2022-10-04 23:25:08.249055: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 203 |
+
2022-10-04 23:25:08.249234: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 204 |
+
2022-10-04 23:25:08.251460: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 205 |
+
2022-10-04 23:25:08.251952: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 206 |
+
2022-10-04 23:25:08.252077: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 207 |
+
2022-10-04 23:25:08.253777: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 208 |
+
2022-10-04 23:25:08.254092: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 209 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 210 |
+
2022-10-04 23:25:08.254161: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 211 |
+
2022-10-04 23:25:08.255008: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 212 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 213 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 214 |
+
2022-10-04 23:25:08.255031: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 215 |
+
2022-10-04 23:25:08.255051: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 216 |
+
2022-10-04 23:25:08.255069: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 217 |
+
2022-10-04 23:25:08.255101: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 218 |
+
2022-10-04 23:25:08.255118: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 219 |
+
2022-10-04 23:25:08.255134: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 220 |
+
2022-10-04 23:25:08.255149: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 221 |
+
2022-10-04 23:25:08.255164: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 222 |
+
2022-10-04 23:25:08.256750: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 223 |
+
2022-10-04 23:25:08.256780: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 224 |
+
2022-10-04 23:25:08.732434: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 225 |
+
2022-10-04 23:25:08.732524: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 226 |
+
2022-10-04 23:25:08.732536: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 227 |
+
2022-10-04 23:25:08.736495: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
|
| 228 |
+
2022-10-04 23:26:00.720957: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 229 |
+
2022-10-04 23:26:00.722745: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
|
| 230 |
+
2022-10-04 23:26:00.761672: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 231 |
+
2022-10-04 23:26:01.245841: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 232 |
+
2022-10-04 23:26:01.247450: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 233 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
|
| 234 |
+
cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
|
| 235 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
|
| 236 |
+
profile_prob = profile / np.sum(profile)
|
| 237 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
|
| 238 |
+
shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
|
| 239 |
+
/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
|
| 240 |
+
curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
|
| 241 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 242 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 243 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 244 |
+
findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
|
| 245 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 246 |
+
No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
|
| 247 |
+
2022-10-04 23:26:54.080265: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 248 |
+
2022-10-04 23:26:55.232060: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 249 |
+
2022-10-04 23:26:55.232866: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 250 |
+
2022-10-04 23:26:55.310636: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 251 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 252 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 253 |
+
2022-10-04 23:26:55.310726: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 254 |
+
2022-10-04 23:26:55.312864: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 255 |
+
2022-10-04 23:26:55.312914: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 256 |
+
2022-10-04 23:26:55.313905: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 257 |
+
2022-10-04 23:26:55.314089: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 258 |
+
2022-10-04 23:26:55.316374: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 259 |
+
2022-10-04 23:26:55.316911: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 260 |
+
2022-10-04 23:26:55.317047: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 261 |
+
2022-10-04 23:26:55.318777: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 262 |
+
2022-10-04 23:26:55.319100: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 263 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 264 |
+
2022-10-04 23:26:55.319173: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 265 |
+
2022-10-04 23:26:55.320022: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 266 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 267 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 268 |
+
2022-10-04 23:26:55.320049: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 269 |
+
2022-10-04 23:26:55.320066: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 270 |
+
2022-10-04 23:26:55.320082: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 271 |
+
2022-10-04 23:26:55.320097: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 272 |
+
2022-10-04 23:26:55.320111: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 273 |
+
2022-10-04 23:26:55.320125: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 274 |
+
2022-10-04 23:26:55.320139: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 275 |
+
2022-10-04 23:26:55.320152: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 276 |
+
2022-10-04 23:26:55.321724: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 277 |
+
2022-10-04 23:26:55.321758: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 278 |
+
2022-10-04 23:26:55.789833: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 279 |
+
2022-10-04 23:26:55.789910: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 280 |
+
2022-10-04 23:26:55.789924: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 281 |
+
2022-10-04 23:26:55.794200: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
|
| 282 |
+
WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
|
| 283 |
+
2022-10-04 23:27:06.935770: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 284 |
+
2022-10-04 23:27:06.936291: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
|
| 285 |
+
2022-10-04 23:27:07.137698: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 286 |
+
2022-10-04 23:27:07.659068: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 287 |
+
2022-10-04 23:27:07.660842: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 288 |
+
mkdir: cannot create directory ‘/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//footprints’: File exists
|
| 289 |
+
2022-10-04 23:28:42.650486: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 290 |
+
2022-10-04 23:28:43.804631: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 291 |
+
2022-10-04 23:28:43.805406: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
|
| 292 |
+
2022-10-04 23:28:43.884970: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 293 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 294 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 295 |
+
2022-10-04 23:28:43.885061: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 296 |
+
2022-10-04 23:28:43.887231: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 297 |
+
2022-10-04 23:28:43.887281: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 298 |
+
2022-10-04 23:28:43.888244: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 299 |
+
2022-10-04 23:28:43.888423: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 300 |
+
2022-10-04 23:28:43.890745: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 301 |
+
2022-10-04 23:28:43.891233: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 302 |
+
2022-10-04 23:28:43.891357: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 303 |
+
2022-10-04 23:28:43.893022: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 304 |
+
2022-10-04 23:28:43.893345: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
|
| 305 |
+
To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
|
| 306 |
+
2022-10-04 23:28:43.893417: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
|
| 307 |
+
2022-10-04 23:28:43.894270: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
|
| 308 |
+
pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
|
| 309 |
+
coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
|
| 310 |
+
2022-10-04 23:28:43.894315: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 311 |
+
2022-10-04 23:28:43.894335: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 312 |
+
2022-10-04 23:28:43.894350: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 313 |
+
2022-10-04 23:28:43.894364: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
|
| 314 |
+
2022-10-04 23:28:43.894379: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
|
| 315 |
+
2022-10-04 23:28:43.894392: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
|
| 316 |
+
2022-10-04 23:28:43.894406: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
|
| 317 |
+
2022-10-04 23:28:43.894420: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
| 318 |
+
2022-10-04 23:28:43.896214: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
|
| 319 |
+
2022-10-04 23:28:43.896249: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
|
| 320 |
+
2022-10-04 23:28:44.366512: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
|
| 321 |
+
2022-10-04 23:28:44.366610: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
|
| 322 |
+
2022-10-04 23:28:44.366622: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
|
| 323 |
+
2022-10-04 23:28:44.369373: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
|
| 324 |
+
2022-10-04 23:28:55.571949: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
|
| 325 |
+
2022-10-04 23:28:55.572463: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
|
| 326 |
+
2022-10-04 23:28:55.716223: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
|
| 327 |
+
2022-10-04 23:28:56.250470: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
|
| 328 |
+
2022-10-04 23:28:56.252387: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
|
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stdout.txt
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fold_3/model.chrombpnet_nobias.fold_3.ENCSR050VTC.h5
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