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  1. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.batch_loss.tsv +0 -0
  2. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stderr.txt +38 -0
  3. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stdout.txt +1 -0
  4. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet.params.json +11 -0
  5. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_data_params.tsv +3 -0
  6. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stderr.txt +40 -0
  7. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stdout.txt +1 -0
  8. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_model_params.tsv +9 -0
  9. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt +1 -0
  10. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.epoch_loss.csv +11 -0
  11. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stderr.txt +328 -0
  12. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stdout.txt +0 -0
  13. fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stdout_v1.txt +0 -0
  14. fold_0/model.bias_scaled.fold_0.ENCSR050VTC.h5 +3 -0
  15. fold_0/model.bias_scaled.fold_0.ENCSR050VTC.tar +3 -0
  16. fold_0/model.chrombpnet.fold_0.ENCSR050VTC.h5 +3 -0
  17. fold_0/model.chrombpnet.fold_0.ENCSR050VTC.tar +3 -0
  18. fold_0/model.chrombpnet_nobias.fold_0.ENCSR050VTC.h5 +3 -0
  19. fold_0/model.chrombpnet_nobias.fold_0.ENCSR050VTC.tar +3 -0
  20. fold_1/model.bias_scaled.fold_1.ENCSR050VTC.h5 +3 -0
  21. fold_1/model.bias_scaled.fold_1.ENCSR050VTC.tar +3 -0
  22. fold_1/model.chrombpnet.fold_1.ENCSR050VTC.h5 +3 -0
  23. fold_1/model.chrombpnet.fold_1.ENCSR050VTC.tar +3 -0
  24. fold_1/model.chrombpnet_nobias.fold_1.ENCSR050VTC.h5 +3 -0
  25. fold_1/model.chrombpnet_nobias.fold_1.ENCSR050VTC.tar +3 -0
  26. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.args.json +23 -0
  27. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stderr.txt +38 -0
  28. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stdout.txt +1 -0
  29. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet.params.json +11 -0
  30. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_data_params.tsv +3 -0
  31. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stderr.txt +40 -0
  32. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stdout.txt +1 -0
  33. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_model_params.tsv +9 -0
  34. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt +1 -0
  35. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.epoch_loss.csv +12 -0
  36. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stderr.txt +328 -0
  37. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stdout.txt +0 -0
  38. fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stdout_v1.txt +0 -0
  39. fold_2/model.bias_scaled.fold_2.ENCSR050VTC.h5 +3 -0
  40. fold_2/model.bias_scaled.fold_2.ENCSR050VTC.tar +3 -0
  41. fold_2/model.chrombpnet.fold_2.ENCSR050VTC.h5 +3 -0
  42. fold_2/model.chrombpnet.fold_2.ENCSR050VTC.tar +3 -0
  43. fold_2/model.chrombpnet_nobias.fold_2.ENCSR050VTC.h5 +3 -0
  44. fold_2/model.chrombpnet_nobias.fold_2.ENCSR050VTC.tar +3 -0
  45. fold_3/model.bias_scaled.fold_3.ENCSR050VTC.h5 +3 -0
  46. fold_3/model.bias_scaled.fold_3.ENCSR050VTC.tar +3 -0
  47. fold_3/model.chrombpnet.fold_3.ENCSR050VTC.h5 +3 -0
  48. fold_3/model.chrombpnet.fold_3.ENCSR050VTC.tar +3 -0
  49. fold_3/model.chrombpnet_nobias.fold_3.ENCSR050VTC.h5 +3 -0
  50. fold_3/model.chrombpnet_nobias.fold_3.ENCSR050VTC.tar +3 -0
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.batch_loss.tsv ADDED
The diff for this file is too large to render. See raw diff
 
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stderr.txt ADDED
@@ -0,0 +1,38 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
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+ INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
3
+ 2023-07-17 00:25:09.149464: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
4
+ 2023-07-17 00:25:11.446624: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
5
+ 2023-07-17 00:25:11.449898: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
6
+ 2023-07-17 00:25:12.330166: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
7
+ pciBusID: 0000:c0:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
8
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
9
+ 2023-07-17 00:25:12.330260: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
10
+ 2023-07-17 00:25:12.353099: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
11
+ 2023-07-17 00:25:12.353150: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
12
+ 2023-07-17 00:25:12.362862: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
13
+ 2023-07-17 00:25:12.367332: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
14
+ 2023-07-17 00:25:12.382974: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
15
+ 2023-07-17 00:25:12.387091: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
16
+ 2023-07-17 00:25:12.388003: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
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+ 2023-07-17 00:25:12.414972: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
18
+ 2023-07-17 00:25:12.415444: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
19
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
20
+ 2023-07-17 00:25:12.416999: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
21
+ 2023-07-17 00:25:12.434446: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
22
+ pciBusID: 0000:c0:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
23
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
24
+ 2023-07-17 00:25:12.434505: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
25
+ 2023-07-17 00:25:12.434543: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
26
+ 2023-07-17 00:25:12.434571: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
27
+ 2023-07-17 00:25:12.434596: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
28
+ 2023-07-17 00:25:12.434620: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
29
+ 2023-07-17 00:25:12.434644: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
30
+ 2023-07-17 00:25:12.434668: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
31
+ 2023-07-17 00:25:12.434691: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
32
+ 2023-07-17 00:25:12.479592: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
33
+ 2023-07-17 00:25:12.481809: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
34
+ 2023-07-17 00:25:15.020630: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
35
+ 2023-07-17 00:25:15.020732: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
36
+ 2023-07-17 00:25:15.020744: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
37
+ 2023-07-17 00:25:15.027144: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 75650 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-SXM4-80GB, pci bus id: 0000:c0:00.0, compute capability: 8.0)
38
+ 2023-07-17 00:25:16.064588: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.bias_formatting.stdout.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/bias_model_scaled.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/new_model_formats/bias_model_scaled
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet.params.json ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "counts_loss_weight": "1.9",
3
+ "filters": "512",
4
+ "n_dil_layers": "8",
5
+ "bias_model_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias/bias_model_scaled.h5",
6
+ "inputlen": "2114",
7
+ "outputlen": "1000",
8
+ "max_jitter": "500",
9
+ "chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_0.json",
10
+ "negative_sampling_ratio": "0.1"
11
+ }
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_data_params.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ counts_sum_min_thresh 1.0
2
+ counts_sum_max_thresh 526.0
3
+ trainings_pts_post_thresh 142130
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stderr.txt ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
2
+ INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
3
+ 2023-07-17 13:53:01.379151: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
4
+ 2023-07-17 13:53:04.456414: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
5
+ 2023-07-17 13:53:04.462170: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
6
+ 2023-07-17 13:53:04.491647: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
7
+ pciBusID: 0000:03:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
8
+ coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
9
+ 2023-07-17 13:53:04.491758: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
10
+ 2023-07-17 13:53:04.520974: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
11
+ 2023-07-17 13:53:04.521075: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
12
+ 2023-07-17 13:53:04.534981: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
13
+ 2023-07-17 13:53:04.541118: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
14
+ 2023-07-17 13:53:04.563811: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
15
+ 2023-07-17 13:53:04.569743: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
16
+ 2023-07-17 13:53:04.570900: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
17
+ 2023-07-17 13:53:04.578858: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
18
+ 2023-07-17 13:53:04.579188: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
19
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
20
+ 2023-07-17 13:53:04.580037: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
21
+ 2023-07-17 13:53:04.580291: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
22
+ pciBusID: 0000:03:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
23
+ coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
24
+ 2023-07-17 13:53:04.580321: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
25
+ 2023-07-17 13:53:04.580344: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
26
+ 2023-07-17 13:53:04.580366: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
27
+ 2023-07-17 13:53:04.580386: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
28
+ 2023-07-17 13:53:04.580414: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
29
+ 2023-07-17 13:53:04.580436: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
30
+ 2023-07-17 13:53:04.580457: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
31
+ 2023-07-17 13:53:04.580478: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
32
+ 2023-07-17 13:53:04.580821: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
33
+ 2023-07-17 13:53:04.582131: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
34
+ 2023-07-17 13:53:06.441076: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
35
+ 2023-07-17 13:53:06.441180: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
36
+ 2023-07-17 13:53:06.441197: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
37
+ 2023-07-17 13:53:06.444244: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14957 MB memory) -> physical GPU (device: 0, name: Tesla P100-PCIE-16GB, pci bus id: 0000:03:00.0, compute capability: 6.0)
38
+ 2023-07-17 13:53:08.847741: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
39
+ /opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
40
+ , UserWarning)
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_formatting.stdout.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/chrombpnet.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/new_model_formats/chrombpnet
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_model_params.tsv ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
 
1
+ counts_loss_weight 1.9
2
+ filters 512
3
+ n_dil_layers 8
4
+ bias_model_path /scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias/bias_model_scaled.h5
5
+ inputlen 2114
6
+ outputlen 1000
7
+ max_jitter 500
8
+ chr_fold_path /scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_0.json
9
+ negative_sampling_ratio 0.1
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/chrombpnet_wo_bias.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias/new_model_formats/chrombpnet_wo_bias
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.epoch_loss.csv ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ epoch,logcount_predictions_loss,logits_profile_predictions_loss,loss,val_logcount_predictions_loss,val_logits_profile_predictions_loss,val_loss
2
+ 0,1.190574049949646,153.957275390625,156.2194061279297,0.45831894874572754,147.2349090576172,148.105712890625
3
+ 1,0.5305262207984924,149.57618713378906,150.5841522216797,0.4049486517906189,146.034912109375,146.8043670654297
4
+ 2,0.4761658012866974,148.29525756835938,149.20022583007812,0.40537604689598083,146.39149475097656,147.16177368164062
5
+ 3,0.45014017820358276,147.73187255859375,148.5869598388672,0.3792314827442169,145.6910858154297,146.41162109375
6
+ 4,0.4292422831058502,147.07583618164062,147.8914794921875,0.3596772253513336,145.35711669921875,146.0404510498047
7
+ 5,0.4118763506412506,146.62074279785156,147.40350341796875,0.4108142554759979,145.4069366455078,146.1875
8
+ 6,0.40493717789649963,145.98631286621094,146.7556610107422,0.4726986587047577,145.71290588378906,146.61093139648438
9
+ 7,0.39594414830207825,145.30691528320312,146.05899047851562,0.3574109673500061,145.4904022216797,146.1694793701172
10
+ 8,0.3672647476196289,143.3870086669922,144.0847625732422,0.3332638442516327,145.7316436767578,146.36495971679688
11
+ 9,0.3580976724624634,142.0812530517578,142.7616424560547,0.3475518226623535,146.6420135498047,147.3024139404297
fold_0/logs.models.fold_0.ENCSR050VTC/logfile.modelling.fold_0.ENCSR050VTC.stderr.txt ADDED
@@ -0,0 +1,328 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2022-03-01 17:14:05.510944: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2
+ 2022-03-01 17:22:47.465640: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
3
+ 2022-03-01 17:22:47.467506: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
4
+ 2022-03-01 17:22:47.504675: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
5
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
6
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
7
+ 2022-03-01 17:22:47.504785: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
8
+ 2022-03-01 17:22:47.536032: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
9
+ 2022-03-01 17:22:47.536227: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
10
+ 2022-03-01 17:22:47.553337: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
11
+ 2022-03-01 17:22:47.561421: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
12
+ 2022-03-01 17:22:47.589273: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
13
+ 2022-03-01 17:22:47.597101: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
14
+ 2022-03-01 17:22:47.599098: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
15
+ 2022-03-01 17:22:47.601695: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
16
+ 2022-03-01 17:22:47.602223: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
17
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
18
+ 2022-03-01 17:22:47.602354: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
19
+ 2022-03-01 17:22:47.602876: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
20
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
21
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
22
+ 2022-03-01 17:22:47.602936: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
23
+ 2022-03-01 17:22:47.602978: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
24
+ 2022-03-01 17:22:47.603004: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
25
+ 2022-03-01 17:22:47.603029: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
26
+ 2022-03-01 17:22:47.603053: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
27
+ 2022-03-01 17:22:47.603078: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
28
+ 2022-03-01 17:22:47.603103: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
29
+ 2022-03-01 17:22:47.603128: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
30
+ 2022-03-01 17:22:47.603656: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
31
+ 2022-03-01 17:22:47.605674: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
32
+ 2022-03-01 17:22:49.722974: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
33
+ 2022-03-01 17:22:49.723095: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
34
+ 2022-03-01 17:22:49.723117: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
35
+ 2022-03-01 17:22:49.728979: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
36
+ 2022-03-01 17:22:51.363247: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
37
+ 2022-03-01 17:22:51.374337: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
38
+ 2022-03-01 17:22:51.659902: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
39
+ 2022-03-01 17:22:53.070441: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
40
+ 2022-03-01 17:22:53.080939: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
41
+ 2022-03-01 17:23:33.888193: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
42
+ 2022-03-01 17:23:36.420756: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
43
+ 2022-03-01 17:23:36.421951: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
44
+ 2022-03-01 17:23:36.464684: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
45
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
46
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
47
+ 2022-03-01 17:23:36.464780: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
48
+ 2022-03-01 17:23:36.468210: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
49
+ 2022-03-01 17:23:36.468374: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
50
+ 2022-03-01 17:23:36.469965: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
51
+ 2022-03-01 17:23:36.470372: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
52
+ 2022-03-01 17:23:36.473912: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
53
+ 2022-03-01 17:23:36.474808: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
54
+ 2022-03-01 17:23:36.475005: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
55
+ 2022-03-01 17:23:36.475716: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
56
+ 2022-03-01 17:23:36.476141: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
57
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
58
+ 2022-03-01 17:23:36.476251: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
59
+ 2022-03-01 17:23:36.476616: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
60
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
61
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
62
+ 2022-03-01 17:23:36.476690: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
63
+ 2022-03-01 17:23:36.476737: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
64
+ 2022-03-01 17:23:36.476762: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
65
+ 2022-03-01 17:23:36.476786: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
66
+ 2022-03-01 17:23:36.476820: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
67
+ 2022-03-01 17:23:36.476844: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
68
+ 2022-03-01 17:23:36.476867: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
69
+ 2022-03-01 17:23:36.476890: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
70
+ 2022-03-01 17:23:36.477425: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
71
+ 2022-03-01 17:23:36.477474: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
72
+ 2022-03-01 17:23:37.150712: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
73
+ 2022-03-01 17:23:37.150835: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
74
+ 2022-03-01 17:23:37.150854: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
75
+ 2022-03-01 17:23:37.151974: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
76
+ 2022-03-01 17:30:41.390745: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
77
+ 2022-03-01 17:30:41.391426: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
78
+ 2022-03-01 17:30:43.945634: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
79
+ 2022-03-01 17:30:48.170363: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
80
+ 2022-03-01 17:30:48.193246: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
81
+ WARNING:tensorflow:Callback method `on_train_batch_end` is slow compared to the batch time (batch time: 0.1809s vs `on_train_batch_end` time: 0.2536s). Check your callbacks.
82
+ 2022-03-01 20:23:17.795576: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
83
+ 2022-03-01 20:23:21.437018: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
84
+ 2022-03-01 20:23:21.438176: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
85
+ 2022-03-01 20:23:21.484002: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
86
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
87
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
88
+ 2022-03-01 20:23:21.484099: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
89
+ 2022-03-01 20:23:21.487468: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
90
+ 2022-03-01 20:23:21.487544: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
91
+ 2022-03-01 20:23:21.488983: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
92
+ 2022-03-01 20:23:21.489235: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
93
+ 2022-03-01 20:23:21.492659: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
94
+ 2022-03-01 20:23:21.493414: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
95
+ 2022-03-01 20:23:21.493593: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
96
+ 2022-03-01 20:23:21.494302: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
97
+ 2022-03-01 20:23:21.494693: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
98
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
99
+ 2022-03-01 20:23:21.494802: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
100
+ 2022-03-01 20:23:21.495152: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
101
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
102
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
103
+ 2022-03-01 20:23:21.495187: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
104
+ 2022-03-01 20:23:21.495216: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
105
+ 2022-03-01 20:23:21.495243: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
106
+ 2022-03-01 20:23:21.495269: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
107
+ 2022-03-01 20:23:21.495294: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
108
+ 2022-03-01 20:23:21.495320: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
109
+ 2022-03-01 20:23:21.495346: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
110
+ 2022-03-01 20:23:21.495372: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
111
+ 2022-03-01 20:23:21.495945: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
112
+ 2022-03-01 20:23:21.495989: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
113
+ 2022-03-01 20:23:22.150106: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
114
+ 2022-03-01 20:23:22.150208: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
115
+ 2022-03-01 20:23:22.150227: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
116
+ 2022-03-01 20:23:22.151329: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
117
+ 2022-03-01 20:25:19.724219: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
118
+ 2022-03-01 20:25:19.729063: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
119
+ 2022-03-01 20:25:19.855309: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
120
+ 2022-03-01 20:25:20.159056: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
121
+ 2022-03-01 20:25:20.161765: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
122
+ /opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
123
+ , UserWarning)
124
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
125
+ cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
126
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
127
+ profile_prob = profile / np.sum(profile)
128
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
129
+ shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
130
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
131
+ curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
132
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
133
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
134
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
135
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
136
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
137
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
138
+ 2022-03-01 20:29:55.091923: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
139
+ 2022-03-01 20:29:58.348494: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
140
+ 2022-03-01 20:29:58.349650: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
141
+ 2022-03-01 20:29:58.404307: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
142
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
143
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
144
+ 2022-03-01 20:29:58.404404: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
145
+ 2022-03-01 20:29:58.407800: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
146
+ 2022-03-01 20:29:58.407866: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
147
+ 2022-03-01 20:29:58.409281: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
148
+ 2022-03-01 20:29:58.409532: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
149
+ 2022-03-01 20:29:58.412925: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
150
+ 2022-03-01 20:29:58.413674: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
151
+ 2022-03-01 20:29:58.413863: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
152
+ 2022-03-01 20:29:58.414531: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
153
+ 2022-03-01 20:29:58.414928: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
154
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
155
+ 2022-03-01 20:29:58.415044: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
156
+ 2022-03-01 20:29:58.415374: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
157
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
158
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
159
+ 2022-03-01 20:29:58.415409: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
160
+ 2022-03-01 20:29:58.415444: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
161
+ 2022-03-01 20:29:58.415476: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
162
+ 2022-03-01 20:29:58.415507: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
163
+ 2022-03-01 20:29:58.415537: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
164
+ 2022-03-01 20:29:58.415567: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
165
+ 2022-03-01 20:29:58.415597: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
166
+ 2022-03-01 20:29:58.415627: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
167
+ 2022-03-01 20:29:58.416192: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
168
+ 2022-03-01 20:29:58.416236: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
169
+ 2022-03-01 20:29:59.061949: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
170
+ 2022-03-01 20:29:59.062047: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
171
+ 2022-03-01 20:29:59.062068: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
172
+ 2022-03-01 20:29:59.063143: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
173
+ WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
174
+ 2022-03-01 20:31:41.307453: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
175
+ 2022-03-01 20:31:41.310666: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
176
+ 2022-03-01 20:31:41.395053: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
177
+ 2022-03-01 20:31:41.701934: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
178
+ 2022-03-01 20:31:41.703938: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
179
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
180
+ cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
181
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
182
+ profile_prob = profile / np.sum(profile)
183
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
184
+ shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
185
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
186
+ curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
187
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
188
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
189
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
190
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
191
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
192
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
193
+ 2022-03-01 20:36:01.216363: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
194
+ 2022-03-01 20:36:04.705844: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
195
+ 2022-03-01 20:36:04.707008: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
196
+ 2022-03-01 20:36:04.753041: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
197
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
198
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
199
+ 2022-03-01 20:36:04.753135: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
200
+ 2022-03-01 20:36:04.756516: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
201
+ 2022-03-01 20:36:04.756587: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
202
+ 2022-03-01 20:36:04.758006: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
203
+ 2022-03-01 20:36:04.758255: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
204
+ 2022-03-01 20:36:04.761701: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
205
+ 2022-03-01 20:36:04.762446: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
206
+ 2022-03-01 20:36:04.762627: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
207
+ 2022-03-01 20:36:04.763327: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
208
+ 2022-03-01 20:36:04.763719: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
209
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
210
+ 2022-03-01 20:36:04.763824: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
211
+ 2022-03-01 20:36:04.764154: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
212
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
213
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
214
+ 2022-03-01 20:36:04.764187: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
215
+ 2022-03-01 20:36:04.764216: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
216
+ 2022-03-01 20:36:04.764241: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
217
+ 2022-03-01 20:36:04.764288: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
218
+ 2022-03-01 20:36:04.764316: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
219
+ 2022-03-01 20:36:04.764341: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
220
+ 2022-03-01 20:36:04.764366: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
221
+ 2022-03-01 20:36:04.764390: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
222
+ 2022-03-01 20:36:04.764953: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
223
+ 2022-03-01 20:36:04.764997: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
224
+ 2022-03-01 20:36:05.426292: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
225
+ 2022-03-01 20:36:05.426370: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
226
+ 2022-03-01 20:36:05.426389: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
227
+ 2022-03-01 20:36:05.427491: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
228
+ 2022-03-01 20:37:47.947554: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
229
+ 2022-03-01 20:37:47.949885: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
230
+ 2022-03-01 20:37:48.003553: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
231
+ 2022-03-01 20:37:48.303766: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
232
+ 2022-03-01 20:37:48.305849: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
233
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
234
+ cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
235
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
236
+ profile_prob = profile / np.sum(profile)
237
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
238
+ shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
239
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
240
+ curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
241
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
242
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
243
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
244
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
245
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
246
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
247
+ 2022-03-01 20:39:21.463929: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
248
+ 2022-03-01 20:39:23.107943: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
249
+ 2022-03-01 20:39:23.109392: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
250
+ 2022-03-01 20:39:23.156578: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
251
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
252
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
253
+ 2022-03-01 20:39:23.156680: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
254
+ 2022-03-01 20:39:23.160031: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
255
+ 2022-03-01 20:39:23.160101: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
256
+ 2022-03-01 20:39:23.161503: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
257
+ 2022-03-01 20:39:23.161756: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
258
+ 2022-03-01 20:39:23.165175: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
259
+ 2022-03-01 20:39:23.165908: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
260
+ 2022-03-01 20:39:23.166086: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
261
+ 2022-03-01 20:39:23.166731: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
262
+ 2022-03-01 20:39:23.167148: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
263
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
264
+ 2022-03-01 20:39:23.167238: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
265
+ 2022-03-01 20:39:23.167571: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
266
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
267
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
268
+ 2022-03-01 20:39:23.167612: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
269
+ 2022-03-01 20:39:23.167641: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
270
+ 2022-03-01 20:39:23.167668: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
271
+ 2022-03-01 20:39:23.167694: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
272
+ 2022-03-01 20:39:23.167720: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
273
+ 2022-03-01 20:39:23.167746: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
274
+ 2022-03-01 20:39:23.167772: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
275
+ 2022-03-01 20:39:23.167807: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
276
+ 2022-03-01 20:39:23.168328: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
277
+ 2022-03-01 20:39:23.168376: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
278
+ 2022-03-01 20:39:23.830574: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
279
+ 2022-03-01 20:39:23.830692: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
280
+ 2022-03-01 20:39:23.830713: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
281
+ 2022-03-01 20:39:23.831757: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
282
+ WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
283
+ 2022-03-01 20:39:43.257628: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
284
+ 2022-03-01 20:39:43.258306: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2400035000 Hz
285
+ 2022-03-01 20:39:43.551551: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
286
+ 2022-03-01 20:39:43.941018: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
287
+ 2022-03-01 20:39:43.943357: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
288
+ mkdir: cannot create directory ‘/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias//footprints’: File exists
289
+ 2022-03-01 20:42:52.023498: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
290
+ 2022-03-01 20:42:53.659360: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
291
+ 2022-03-01 20:42:53.660499: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
292
+ 2022-03-01 20:42:53.706954: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
293
+ pciBusID: 0000:04:00.0 name: Tesla V100-SXM2-16GB computeCapability: 7.0
294
+ coreClock: 1.53GHz coreCount: 80 deviceMemorySize: 15.78GiB deviceMemoryBandwidth: 836.37GiB/s
295
+ 2022-03-01 20:42:53.707055: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
296
+ 2022-03-01 20:42:53.710417: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
297
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298
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299
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300
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301
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302
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303
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304
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305
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306
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307
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308
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309
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310
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311
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312
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313
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314
+ 2022-03-01 20:42:53.718178: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
315
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316
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317
+ 2022-03-01 20:42:53.718267: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
318
+ 2022-03-01 20:42:53.718844: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
319
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320
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321
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322
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323
+ 2022-03-01 20:42:54.389258: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14761 MB memory) -> physical GPU (device: 0, name: Tesla V100-SXM2-16GB, pci bus id: 0000:04:00.0, compute capability: 7.0)
324
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325
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326
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327
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328
+ 2022-03-01 20:43:14.075493: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
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fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.args.json ADDED
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1
+ {
2
+ "genome": "/scratch/groups/akundaje/anusri/chromatin_atlas/reference/hg38.genome.fa",
3
+ "bigwig": "/oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//preprocessing/bigWigs/ENCSR050VTC.bigWig",
4
+ "peaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//filtered.peaks.bed",
5
+ "nonpeaks": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//filtered.nonpeaks.bed",
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+ "output_prefix": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//chrombpnet",
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+ "chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_2.json",
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+ "trackables": [
9
+ "logcount_predictions_loss",
10
+ "loss",
11
+ "logits_profile_predictions_loss",
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+ "val_logcount_predictions_loss",
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+ "val_loss",
14
+ "val_logits_profile_predictions_loss"
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+ ],
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+ "epochs": 50,
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+ "early_stop": 5,
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19
+ "learning_rate": 0.001,
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+ "params": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//chrombpnet_model_params.tsv",
21
+ "seed": 1234,
22
+ "architecture_from_file": "/home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/models/chrombpnet_with_bias_model.py"
23
+ }
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stderr.txt ADDED
@@ -0,0 +1,38 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
2
+ INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
3
+ 2023-07-17 00:25:09.068312: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
4
+ 2023-07-17 00:25:11.374869: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
5
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6
+ 2023-07-17 00:25:11.974594: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
7
+ pciBusID: 0000:4b:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
8
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
9
+ 2023-07-17 00:25:11.974731: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
10
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11
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12
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13
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14
+ 2023-07-17 00:25:12.026747: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
15
+ 2023-07-17 00:25:12.031172: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
16
+ 2023-07-17 00:25:12.032138: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
17
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18
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19
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
20
+ 2023-07-17 00:25:12.046155: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
21
+ 2023-07-17 00:25:12.069891: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
22
+ pciBusID: 0000:4b:00.0 name: NVIDIA A100-SXM4-80GB computeCapability: 8.0
23
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 79.15GiB deviceMemoryBandwidth: 1.85TiB/s
24
+ 2023-07-17 00:25:12.069937: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
25
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26
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27
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28
+ 2023-07-17 00:25:12.070055: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
29
+ 2023-07-17 00:25:12.070075: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
30
+ 2023-07-17 00:25:12.070094: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
31
+ 2023-07-17 00:25:12.070113: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
32
+ 2023-07-17 00:25:12.102078: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
33
+ 2023-07-17 00:25:12.104498: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
34
+ 2023-07-17 00:25:15.152196: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
35
+ 2023-07-17 00:25:15.152342: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
36
+ 2023-07-17 00:25:15.152355: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
37
+ 2023-07-17 00:25:15.194939: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 75650 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-SXM4-80GB, pci bus id: 0000:4b:00.0, compute capability: 8.0)
38
+ 2023-07-17 00:25:16.318444: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.bias_formatting.stdout.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/bias_model_scaled.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/new_model_formats/bias_model_scaled
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet.params.json ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "counts_loss_weight": "1.9",
3
+ "filters": "512",
4
+ "n_dil_layers": "8",
5
+ "bias_model_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/bias_model_scaled.h5",
6
+ "inputlen": "2114",
7
+ "outputlen": "1000",
8
+ "max_jitter": "500",
9
+ "chr_fold_path": "/scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_2.json",
10
+ "negative_sampling_ratio": "0.1"
11
+ }
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_data_params.tsv ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ counts_sum_min_thresh 1.0
2
+ counts_sum_max_thresh 524.0
3
+ trainings_pts_post_thresh 149901
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stderr.txt ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ INFO: underlay of /etc/localtime required more than 50 (88) bind mounts
2
+ INFO: underlay of /usr/bin/nvidia-smi required more than 50 (355) bind mounts
3
+ 2023-07-17 13:53:01.409124: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
4
+ 2023-07-17 13:53:04.529437: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
5
+ 2023-07-17 13:53:04.535261: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
6
+ 2023-07-17 13:53:04.576871: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
7
+ pciBusID: 0000:04:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
8
+ coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
9
+ 2023-07-17 13:53:04.576936: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
10
+ 2023-07-17 13:53:04.608006: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
11
+ 2023-07-17 13:53:04.608188: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
12
+ 2023-07-17 13:53:04.624199: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
13
+ 2023-07-17 13:53:04.630772: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
14
+ 2023-07-17 13:53:04.654354: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
15
+ 2023-07-17 13:53:04.660141: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
16
+ 2023-07-17 13:53:04.661334: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
17
+ 2023-07-17 13:53:04.667176: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
18
+ 2023-07-17 13:53:04.667583: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
19
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
20
+ 2023-07-17 13:53:04.668519: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
21
+ 2023-07-17 13:53:04.685264: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
22
+ pciBusID: 0000:04:00.0 name: Tesla P100-PCIE-16GB computeCapability: 6.0
23
+ coreClock: 1.3285GHz coreCount: 56 deviceMemorySize: 15.89GiB deviceMemoryBandwidth: 681.88GiB/s
24
+ 2023-07-17 13:53:04.685395: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
25
+ 2023-07-17 13:53:04.685465: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
26
+ 2023-07-17 13:53:04.685495: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
27
+ 2023-07-17 13:53:04.685522: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
28
+ 2023-07-17 13:53:04.685548: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
29
+ 2023-07-17 13:53:04.685575: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
30
+ 2023-07-17 13:53:04.685601: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
31
+ 2023-07-17 13:53:04.685627: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
32
+ 2023-07-17 13:53:04.686609: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
33
+ 2023-07-17 13:53:04.688122: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
34
+ 2023-07-17 13:53:06.555486: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
35
+ 2023-07-17 13:53:06.555593: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
36
+ 2023-07-17 13:53:06.555611: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
37
+ 2023-07-17 13:53:06.575883: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 14957 MB memory) -> physical GPU (device: 0, name: Tesla P100-PCIE-16GB, pci bus id: 0000:04:00.0, compute capability: 6.0)
38
+ 2023-07-17 13:53:08.968483: W tensorflow/python/util/util.cc:348] Sets are not currently considered sequences, but this may change in the future, so consider avoiding using them.
39
+ /opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
40
+ , UserWarning)
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_formatting.stdout.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/chrombpnet.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/new_model_formats/chrombpnet
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_model_params.tsv ADDED
@@ -0,0 +1,9 @@
 
 
 
 
 
 
 
 
 
 
1
+ counts_loss_weight 1.9
2
+ filters 512
3
+ n_dil_layers 8
4
+ bias_model_path /scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/bias_model_scaled.h5
5
+ inputlen 2114
6
+ outputlen 1000
7
+ max_jitter 500
8
+ chr_fold_path /scratch/groups/akundaje/anusri/chromatin_atlas/splits/fold_2.json
9
+ negative_sampling_ratio 0.1
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.chrombpnet_no_bias_formatting.stderr.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ singularity exec --nv /home/groups/akundaje/anusri/simg/tf-atlas_gcp-modeling.sif python get_new_tf_model_format.py -i /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/chrombpnet_wo_bias.h5 -o /oak/stanford/groups/akundaje/projects/chromatin-atlas-2022/DNASE//ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2/new_model_formats/chrombpnet_wo_bias
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.epoch_loss.csv ADDED
@@ -0,0 +1,12 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ epoch,logcount_predictions_loss,logits_profile_predictions_loss,loss,val_logcount_predictions_loss,val_logits_profile_predictions_loss,val_loss
2
+ 0,1.205910563468933,152.8164520263672,155.1073760986328,0.5932305455207825,155.01309204101562,156.14022827148438
3
+ 1,0.5178511142730713,148.947021484375,149.93096923828125,0.5029187798500061,154.33303833007812,155.28855895996094
4
+ 2,0.4798010289669037,147.82803344726562,148.73977661132812,0.4240909516811371,153.30987548828125,154.11561584472656
5
+ 3,0.4570019841194153,146.9898681640625,147.85801696777344,0.4530564844608307,153.67520141601562,154.53599548339844
6
+ 4,0.4369247853755951,146.5171661376953,147.3473358154297,0.40781861543655396,153.3402862548828,154.11514282226562
7
+ 5,0.42232203483581543,145.82777404785156,146.6301727294922,0.4057151675224304,153.0992889404297,153.8702392578125
8
+ 6,0.4125921130180359,145.32211303710938,146.10595703125,0.404712438583374,153.3608856201172,154.12989807128906
9
+ 7,0.4018162488937378,144.77862548828125,145.54185485839844,0.38635125756263733,153.39111328125,154.12521362304688
10
+ 8,0.3917403221130371,144.48004150390625,145.22406005859375,0.3898344039916992,154.0139617919922,154.75466918945312
11
+ 9,0.3641541004180908,142.4712677001953,143.16302490234375,0.3753404915332794,153.67303466796875,154.38616943359375
12
+ 10,0.35608306527137756,141.34388732910156,142.02032470703125,0.3709629774093628,154.35549926757812,155.0602569580078
fold_2/logs.models.fold_2.ENCSR050VTC/logfile.modelling.fold_2.ENCSR050VTC.stderr.txt ADDED
@@ -0,0 +1,328 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ 2022-10-04 22:03:17.116581: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
2
+ 2022-10-04 22:07:32.914339: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
3
+ 2022-10-04 22:07:32.915550: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
4
+ 2022-10-04 22:07:33.036644: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
5
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
6
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
7
+ 2022-10-04 22:07:33.136024: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
8
+ 2022-10-04 22:07:33.162031: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
9
+ 2022-10-04 22:07:33.162156: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
10
+ 2022-10-04 22:07:33.175455: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
11
+ 2022-10-04 22:07:33.181640: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
12
+ 2022-10-04 22:07:33.203084: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
13
+ 2022-10-04 22:07:33.209143: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
14
+ 2022-10-04 22:07:33.210580: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
15
+ 2022-10-04 22:07:33.215531: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
16
+ 2022-10-04 22:07:33.215889: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
17
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
18
+ 2022-10-04 22:07:33.215960: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
19
+ 2022-10-04 22:07:33.217595: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
20
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
21
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
22
+ 2022-10-04 22:07:33.217628: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
23
+ 2022-10-04 22:07:33.217650: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
24
+ 2022-10-04 22:07:33.217666: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
25
+ 2022-10-04 22:07:33.217680: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
26
+ 2022-10-04 22:07:33.217694: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
27
+ 2022-10-04 22:07:33.217708: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
28
+ 2022-10-04 22:07:33.217721: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
29
+ 2022-10-04 22:07:33.217735: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
30
+ 2022-10-04 22:07:33.220903: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
31
+ 2022-10-04 22:07:33.222446: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
32
+ 2022-10-04 22:07:34.885051: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
33
+ 2022-10-04 22:07:34.885140: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
34
+ 2022-10-04 22:07:34.885153: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
35
+ 2022-10-04 22:07:34.893327: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
36
+ 2022-10-04 22:07:36.133083: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
37
+ 2022-10-04 22:07:36.141794: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
38
+ 2022-10-04 22:07:36.330137: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
39
+ 2022-10-04 22:07:37.844488: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
40
+ 2022-10-04 22:07:37.852814: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
41
+ 2022-10-04 22:08:05.855300: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
42
+ 2022-10-04 22:08:07.495301: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
43
+ 2022-10-04 22:08:07.496092: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
44
+ 2022-10-04 22:08:07.573106: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
45
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
46
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
47
+ 2022-10-04 22:08:07.573193: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
48
+ 2022-10-04 22:08:07.575385: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
49
+ 2022-10-04 22:08:07.575483: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
50
+ 2022-10-04 22:08:07.576490: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
51
+ 2022-10-04 22:08:07.576703: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
52
+ 2022-10-04 22:08:07.579078: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
53
+ 2022-10-04 22:08:07.579630: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
54
+ 2022-10-04 22:08:07.579765: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
55
+ 2022-10-04 22:08:07.581479: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
56
+ 2022-10-04 22:08:07.581807: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
57
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
58
+ 2022-10-04 22:08:07.581876: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
59
+ 2022-10-04 22:08:07.582719: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
60
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
61
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
62
+ 2022-10-04 22:08:07.582760: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
63
+ 2022-10-04 22:08:07.582782: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
64
+ 2022-10-04 22:08:07.582798: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
65
+ 2022-10-04 22:08:07.582813: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
66
+ 2022-10-04 22:08:07.582827: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
67
+ 2022-10-04 22:08:07.582842: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
68
+ 2022-10-04 22:08:07.582855: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
69
+ 2022-10-04 22:08:07.582870: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
70
+ 2022-10-04 22:08:07.584440: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
71
+ 2022-10-04 22:08:07.584472: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
72
+ 2022-10-04 22:08:08.071356: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
73
+ 2022-10-04 22:08:08.071451: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
74
+ 2022-10-04 22:08:08.071464: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
75
+ 2022-10-04 22:08:08.074269: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
76
+ 2022-10-04 22:12:26.128310: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
77
+ 2022-10-04 22:12:26.128735: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
78
+ 2022-10-04 22:12:27.520204: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
79
+ 2022-10-04 22:12:27.999126: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
80
+ 2022-10-04 22:12:28.015163: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
81
+ 2022-10-04 22:12:31.382883: I tensorflow/stream_executor/cuda/cuda_blas.cc:1838] TensorFloat-32 will be used for the matrix multiplication. This will only be logged once.
82
+ 2022-10-04 23:19:30.533121: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
83
+ 2022-10-04 23:19:33.102603: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
84
+ 2022-10-04 23:19:33.103420: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
85
+ 2022-10-04 23:19:33.182133: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
86
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
87
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
88
+ 2022-10-04 23:19:33.182219: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
89
+ 2022-10-04 23:19:33.184365: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
90
+ 2022-10-04 23:19:33.184413: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
91
+ 2022-10-04 23:19:33.185394: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
92
+ 2022-10-04 23:19:33.185579: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
93
+ 2022-10-04 23:19:33.187830: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
94
+ 2022-10-04 23:19:33.188320: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
95
+ 2022-10-04 23:19:33.188446: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
96
+ 2022-10-04 23:19:33.190146: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
97
+ 2022-10-04 23:19:33.190468: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
98
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
99
+ 2022-10-04 23:19:33.190536: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
100
+ 2022-10-04 23:19:33.191389: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
101
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
102
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
103
+ 2022-10-04 23:19:33.191411: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
104
+ 2022-10-04 23:19:33.191428: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
105
+ 2022-10-04 23:19:33.191443: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
106
+ 2022-10-04 23:19:33.191457: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
107
+ 2022-10-04 23:19:33.191471: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
108
+ 2022-10-04 23:19:33.191485: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
109
+ 2022-10-04 23:19:33.191498: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
110
+ 2022-10-04 23:19:33.191512: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
111
+ 2022-10-04 23:19:33.193103: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
112
+ 2022-10-04 23:19:33.193132: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
113
+ 2022-10-04 23:19:33.662052: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
114
+ 2022-10-04 23:19:33.662139: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
115
+ 2022-10-04 23:19:33.662151: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
116
+ 2022-10-04 23:19:33.665197: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
117
+ 2022-10-04 23:20:32.162186: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
118
+ 2022-10-04 23:20:32.165810: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
119
+ 2022-10-04 23:20:32.252273: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
120
+ 2022-10-04 23:20:32.730843: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
121
+ 2022-10-04 23:20:32.733036: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
122
+ /opt/conda/lib/python3.7/site-packages/tensorflow/python/keras/layers/core.py:1059: UserWarning: is not loaded, but a Lambda layer uses it. It may cause errors.
123
+ , UserWarning)
124
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
125
+ cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
126
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
127
+ profile_prob = profile / np.sum(profile)
128
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
129
+ shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
130
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
131
+ curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
132
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
133
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
134
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
135
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
136
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
137
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
138
+ 2022-10-04 23:22:21.739970: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
139
+ 2022-10-04 23:22:24.107091: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
140
+ 2022-10-04 23:22:24.107897: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
141
+ 2022-10-04 23:22:24.186041: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
142
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
143
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
144
+ 2022-10-04 23:22:24.186117: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
145
+ 2022-10-04 23:22:24.188300: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
146
+ 2022-10-04 23:22:24.188371: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
147
+ 2022-10-04 23:22:24.189380: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
148
+ 2022-10-04 23:22:24.189573: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
149
+ 2022-10-04 23:22:24.191856: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
150
+ 2022-10-04 23:22:24.192352: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
151
+ 2022-10-04 23:22:24.192484: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
152
+ 2022-10-04 23:22:24.194206: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
153
+ 2022-10-04 23:22:24.194528: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
154
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
155
+ 2022-10-04 23:22:24.194626: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
156
+ 2022-10-04 23:22:24.195477: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
157
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
158
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
159
+ 2022-10-04 23:22:24.195499: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
160
+ 2022-10-04 23:22:24.195517: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
161
+ 2022-10-04 23:22:24.195532: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
162
+ 2022-10-04 23:22:24.195547: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
163
+ 2022-10-04 23:22:24.195560: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
164
+ 2022-10-04 23:22:24.195580: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
165
+ 2022-10-04 23:22:24.195594: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
166
+ 2022-10-04 23:22:24.195608: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
167
+ 2022-10-04 23:22:24.197191: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
168
+ 2022-10-04 23:22:24.197222: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
169
+ 2022-10-04 23:22:24.668385: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
170
+ 2022-10-04 23:22:24.668476: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
171
+ 2022-10-04 23:22:24.668489: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
172
+ 2022-10-04 23:22:24.672682: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
173
+ WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
174
+ 2022-10-04 23:23:16.033827: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
175
+ 2022-10-04 23:23:16.036244: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
176
+ 2022-10-04 23:23:16.094761: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
177
+ 2022-10-04 23:23:16.576024: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
178
+ 2022-10-04 23:23:21.638027: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
179
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
180
+ cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
181
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
182
+ profile_prob = profile / np.sum(profile)
183
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
184
+ shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
185
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
186
+ curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
187
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
188
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
189
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
190
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
191
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
192
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
193
+ 2022-10-04 23:25:05.703184: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
194
+ 2022-10-04 23:25:08.165590: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
195
+ 2022-10-04 23:25:08.166399: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
196
+ 2022-10-04 23:25:08.245806: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
197
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
198
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
199
+ 2022-10-04 23:25:08.245891: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
200
+ 2022-10-04 23:25:08.248036: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
201
+ 2022-10-04 23:25:08.248086: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
202
+ 2022-10-04 23:25:08.249055: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
203
+ 2022-10-04 23:25:08.249234: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
204
+ 2022-10-04 23:25:08.251460: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
205
+ 2022-10-04 23:25:08.251952: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
206
+ 2022-10-04 23:25:08.252077: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
207
+ 2022-10-04 23:25:08.253777: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
208
+ 2022-10-04 23:25:08.254092: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
209
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
210
+ 2022-10-04 23:25:08.254161: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
211
+ 2022-10-04 23:25:08.255008: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
212
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
213
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
214
+ 2022-10-04 23:25:08.255031: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
215
+ 2022-10-04 23:25:08.255051: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
216
+ 2022-10-04 23:25:08.255069: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
217
+ 2022-10-04 23:25:08.255101: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
218
+ 2022-10-04 23:25:08.255118: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
219
+ 2022-10-04 23:25:08.255134: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
220
+ 2022-10-04 23:25:08.255149: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
221
+ 2022-10-04 23:25:08.255164: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
222
+ 2022-10-04 23:25:08.256750: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
223
+ 2022-10-04 23:25:08.256780: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
224
+ 2022-10-04 23:25:08.732434: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
225
+ 2022-10-04 23:25:08.732524: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
226
+ 2022-10-04 23:25:08.732536: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
227
+ 2022-10-04 23:25:08.736495: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
228
+ 2022-10-04 23:26:00.720957: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
229
+ 2022-10-04 23:26:00.722745: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
230
+ 2022-10-04 23:26:00.761672: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
231
+ 2022-10-04 23:26:01.245841: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
232
+ 2022-10-04 23:26:01.247450: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
233
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:69: RuntimeWarning: invalid value encountered in true_divide
234
+ cur_jsd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),pred_probs[idx,:])
235
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/utils/metrics_utils.py:196: RuntimeWarning: invalid value encountered in true_divide
236
+ profile_prob = profile / np.sum(profile)
237
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:78: RuntimeWarning: invalid value encountered in true_divide
238
+ shuffled_labels_prob=shuffled_labels/np.nansum(shuffled_labels)
239
+ /home/users/anusri/chromatin-atlas-anvil/sherlock/chrombpnet/src/training/metrics.py:88: RuntimeWarning: invalid value encountered in true_divide
240
+ curr_jsd_rnd=jensenshannon(true_counts[idx,:]/np.nansum(true_counts[idx,:]),shuffled_labels_prob)
241
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
242
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
243
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
244
+ findfont: Font family ['normal'] not found. Falling back to DejaVu Sans.
245
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
246
+ No artists with labels found to put in legend. Note that artists whose label start with an underscore are ignored when legend() is called with no argument.
247
+ 2022-10-04 23:26:54.080265: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
248
+ 2022-10-04 23:26:55.232060: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
249
+ 2022-10-04 23:26:55.232866: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
250
+ 2022-10-04 23:26:55.310636: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
251
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
252
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
253
+ 2022-10-04 23:26:55.310726: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
254
+ 2022-10-04 23:26:55.312864: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
255
+ 2022-10-04 23:26:55.312914: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
256
+ 2022-10-04 23:26:55.313905: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
257
+ 2022-10-04 23:26:55.314089: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
258
+ 2022-10-04 23:26:55.316374: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
259
+ 2022-10-04 23:26:55.316911: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
260
+ 2022-10-04 23:26:55.317047: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
261
+ 2022-10-04 23:26:55.318777: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
262
+ 2022-10-04 23:26:55.319100: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
263
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
264
+ 2022-10-04 23:26:55.319173: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
265
+ 2022-10-04 23:26:55.320022: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
266
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
267
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
268
+ 2022-10-04 23:26:55.320049: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
269
+ 2022-10-04 23:26:55.320066: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
270
+ 2022-10-04 23:26:55.320082: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
271
+ 2022-10-04 23:26:55.320097: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
272
+ 2022-10-04 23:26:55.320111: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
273
+ 2022-10-04 23:26:55.320125: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
274
+ 2022-10-04 23:26:55.320139: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
275
+ 2022-10-04 23:26:55.320152: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
276
+ 2022-10-04 23:26:55.321724: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
277
+ 2022-10-04 23:26:55.321758: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
278
+ 2022-10-04 23:26:55.789833: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
279
+ 2022-10-04 23:26:55.789910: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
280
+ 2022-10-04 23:26:55.789924: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
281
+ 2022-10-04 23:26:55.794200: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
282
+ WARNING:tensorflow:No training configuration found in the save file, so the model was *not* compiled. Compile it manually.
283
+ 2022-10-04 23:27:06.935770: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
284
+ 2022-10-04 23:27:06.936291: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
285
+ 2022-10-04 23:27:07.137698: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
286
+ 2022-10-04 23:27:07.659068: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
287
+ 2022-10-04 23:27:07.660842: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
288
+ mkdir: cannot create directory ‘/scratch/groups/akundaje/anusri/chromatin_atlas/DNASE/ENCSR050VTC//chrombppnet_model_encsr283tme_bias_fold_2//footprints’: File exists
289
+ 2022-10-04 23:28:42.650486: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
290
+ 2022-10-04 23:28:43.804631: I tensorflow/compiler/jit/xla_cpu_device.cc:41] Not creating XLA devices, tf_xla_enable_xla_devices not set
291
+ 2022-10-04 23:28:43.805406: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcuda.so.1
292
+ 2022-10-04 23:28:43.884970: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
293
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
294
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
295
+ 2022-10-04 23:28:43.885061: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
296
+ 2022-10-04 23:28:43.887231: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
297
+ 2022-10-04 23:28:43.887281: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
298
+ 2022-10-04 23:28:43.888244: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
299
+ 2022-10-04 23:28:43.888423: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
300
+ 2022-10-04 23:28:43.890745: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
301
+ 2022-10-04 23:28:43.891233: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
302
+ 2022-10-04 23:28:43.891357: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
303
+ 2022-10-04 23:28:43.893022: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
304
+ 2022-10-04 23:28:43.893345: I tensorflow/core/platform/cpu_feature_guard.cc:142] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA
305
+ To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags.
306
+ 2022-10-04 23:28:43.893417: I tensorflow/compiler/jit/xla_gpu_device.cc:99] Not creating XLA devices, tf_xla_enable_xla_devices not set
307
+ 2022-10-04 23:28:43.894270: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1720] Found device 0 with properties:
308
+ pciBusID: 0000:46:00.0 name: NVIDIA A100-PCIE-40GB computeCapability: 8.0
309
+ coreClock: 1.41GHz coreCount: 108 deviceMemorySize: 39.45GiB deviceMemoryBandwidth: 1.41TiB/s
310
+ 2022-10-04 23:28:43.894315: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
311
+ 2022-10-04 23:28:43.894335: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
312
+ 2022-10-04 23:28:43.894350: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
313
+ 2022-10-04 23:28:43.894364: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcufft.so.10
314
+ 2022-10-04 23:28:43.894379: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcurand.so.10
315
+ 2022-10-04 23:28:43.894392: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusolver.so.10
316
+ 2022-10-04 23:28:43.894406: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcusparse.so.11
317
+ 2022-10-04 23:28:43.894420: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
318
+ 2022-10-04 23:28:43.896214: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1862] Adding visible gpu devices: 0
319
+ 2022-10-04 23:28:43.896249: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
320
+ 2022-10-04 23:28:44.366512: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1261] Device interconnect StreamExecutor with strength 1 edge matrix:
321
+ 2022-10-04 23:28:44.366610: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1267] 0
322
+ 2022-10-04 23:28:44.366622: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1280] 0: N
323
+ 2022-10-04 23:28:44.369373: I tensorflow/core/common_runtime/gpu/gpu_device.cc:1406] Created TensorFlow device (/job:localhost/replica:0/task:0/device:GPU:0 with 37440 MB memory) -> physical GPU (device: 0, name: NVIDIA A100-PCIE-40GB, pci bus id: 0000:46:00.0, compute capability: 8.0)
324
+ 2022-10-04 23:28:55.571949: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:116] None of the MLIR optimization passes are enabled (registered 2)
325
+ 2022-10-04 23:28:55.572463: I tensorflow/core/platform/profile_utils/cpu_utils.cc:112] CPU Frequency: 2499930000 Hz
326
+ 2022-10-04 23:28:55.716223: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublas.so.11
327
+ 2022-10-04 23:28:56.250470: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcublasLt.so.11
328
+ 2022-10-04 23:28:56.252387: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudnn.so.8
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