Add original-author clock artifacts for pyaging 0.5.4

celldrift.provenance.json

@@ -0,0 +1,16 @@
+{
+  "url": "https://github.com/MorganLevineLab/CellDRIFT",
+  "commit": "066b3e816795f3c0b372ff8d33f59185a490bd8b",
+  "sha256": {
+    "R/CellDRIFT.R": "6ee6af7dae221428823419cf7b78219cbf301a92f941adeda08bb6895c74bbaa",
+    "data/CV.CellDRIFT.rda": "4965aef078d809f5ea9ac6b43078e95422ed246bb867f2cf3e5101c24c3009e0",
+    "data/Fit.CellDRIFT.rda": "cabb4ffabbbb21ef61365a2c80fef0241c885ccb7dd9d91c5b0f94c0c9ea99a3",
+    "data/PCA_tan.rda": "70ec2fa10a536862372fc257d901ca8ea298d0bfd93ec9ed8e14a859348f676b",
+    "data/PCA_yellow.rda": "dc48b27642595d43a3d652ea452b02e1ce079ce724160370439da152d85d4448",
+    "data/exampleDNAm.rda": "a3651b09ea232a73aac771a65d6350f7d430eb1b3f9f891135c66682cfa404aa",
+    "data/tan_module_means.rda": "a85cacd677a377798412682a020a73f55f12133e7c33fbd8b730469682ebb173",
+    "data/yellow_module_means.rda": "5796b864adbea94dc5ffe85be388d3761d13243c2995b99a9d7052c6ecc748e2"
+  },
+  "lambda_min": 0.9280867766247382,
+  "license": "Unspecified in GitHub DESCRIPTION; Zenodo 7693699 lists Other (Open)."
+}

celldrift.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:1864639a5cee8ad78d5d5ae6b4ac614c75d50d1cf5420bc362548d9380d76ecb
+size 103733

dnamphenoagenonprc.provenance.json

@@ -0,0 +1,7 @@
+{
+  "source_url": "https://raw.githubusercontent.com/MorganLevineLab/prcPhenoAge/0af213c60035d8dd568d9d9ba2df90cfbca19596/data-raw/Clock_Levine_PRC.csv",
+  "source_commit": "0af213c60035d8dd568d9d9ba2df90cfbca19596",
+  "source_sha256": "089e2a3661d604c2822f56710b4076d2e36e07e2d2ce64de61f2958b3e9d0043",
+  "intercept": "none, matching author calcPRCPhenoAge/calcnonPRCPhenoAge",
+  "imputation": "FALSE: absent CpGs and supplied NA beta values contribute zero"
+}

dnamphenoagenonprc.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:504f644f782c5f908154308136b8b515b37692c8e88f9bc38f4ec39fe264c25a
+size 20797

dnamphenoageprc.provenance.json

@@ -0,0 +1,7 @@
+{
+  "source_url": "https://raw.githubusercontent.com/MorganLevineLab/prcPhenoAge/0af213c60035d8dd568d9d9ba2df90cfbca19596/data-raw/Clock_Levine_PRC.csv",
+  "source_commit": "0af213c60035d8dd568d9d9ba2df90cfbca19596",
+  "source_sha256": "089e2a3661d604c2822f56710b4076d2e36e07e2d2ce64de61f2958b3e9d0043",
+  "intercept": "none, matching author calcPRCPhenoAge/calcnonPRCPhenoAge",
+  "imputation": "FALSE: absent CpGs and supplied NA beta values contribute zero"
+}

dnamphenoageprc.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:cd6972015b36a8d7640f2a8f32dd4fe911b022b97bfe3905a822b2796d4a1668
+size 7269

intrinclock370.provenance.json

@@ -0,0 +1,8 @@
+{
+  "source_url": "https://zenodo.org/api/records/10426597/files/Tomusiak2023_code.zip/content",
+  "source_sha256": "79c2d1b624c494156c7ee213e2eb62dbb90c133f8ddf4938982a90c301b0c9fa",
+  "demo_sha256": "90517825578d294ee76ef43cc384b6865cb30625b04d0f35df2299d33fe3b324",
+  "selection": "cv.glmnet lambda.1se",
+  "lambda": 0.004567908791233392,
+  "column_index_r": 64
+}

intrinclock370.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:0ec35f47d889c6a4f77b627af1ff7b8c26d4b1455675d969f4ff531e8255ebcc
+size 58269

miage.provenance.json

@@ -0,0 +1,17 @@
+{
+  "original_author_url": "https://www.columbia.edu/~sw2206/softwares/mitotic_age_R_code.zip",
+  "original_author_access": "HTTP403 on 2026-10-02; original ZIP bytes could not be verified",
+  "archive_mirror_url": "https://github.com/anilpsori/DNAm_pipelines_and_biomarkers/tree/d84d6adfc039355d5f9c962fc5faa7d1054f56b2/biomarkers/MiAge",
+  "commit": "d84d6adfc039355d5f9c962fc5faa7d1054f56b2",
+  "sha256": {
+    "function_library.r": "142cf1297819d2982b84550e6ebe4051373e92c8deeca734c8d79c4161428d49",
+    "site_specific_parameters.Rdata": "3c7f3aafcee9728b0b1daa566e93186eea8f736a80041667fb987253dd92863e",
+    "Additional_File1.csv": "2997ec6de30ee60079773c05b1164baaab435112d10ee761dd20e8b95821534a",
+    "README.txt": "09887418e7d45d47fadeb6676c6ffc445178657affd9d9ebc6502d60f2b66b40"
+  },
+  "implementation_source": "Preserved original function_library.r and site_specific_parameters.Rdata; not the mirror's modified MiAge.R wrapper",
+  "publisher_supplement": "https://doi.org/10.6084/m9.figshare.5620603.v2",
+  "publisher_archive_sha256": "998a8b96cbe8261b9c2eb687020d7ac04f1df786d9f7bd2b98c0dbc1e524dbfb",
+  "independent_check": "All 268 CpG IDs, gene symbols, chromosomes, coordinates, and informativeness scores match publisher supplement in order",
+  "license": "No license declared in archived original code/weight files; publisher supplement CC BY 4.0 covers its distinct annotation table"
+}

miage.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2b4e5413412a5e3dc7515de068ad04efb0966dfebb57cb714e7a3a3d7b0b5368
+size 21775

organagechronologicalolink1500adipose.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500adipose.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Adipose_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "dc34f9958de4453c43e3defd7d98480875ae593f7284144ea1cb3e391b96769e",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500adipose.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:92ea27309e5d84ac9764b97e8790365710b42622e67241da63c95a2f5508a51a
+size 8661

organagechronologicalolink1500adrenal.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500adrenal.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Adrenal_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "f49c664b1f678034222c36de1d3935b4b56882e56776d61099d62c13de53a63d",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500adrenal.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:eec17677915885b13aaf636973d51d9cadf335b38428279c52baf9d7af0a831c
+size 8661

organagechronologicalolink1500artery.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500artery.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Artery_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "ff39e34e393cbdec42506dc7ceca3072db718bb0028aa0179aaf9faa24465fe6",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500artery.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c849b592875c33bea7f01b9ec48d3cd2dc1dbda9b33eb3832025eb8389c12d01
+size 8845

organagechronologicalolink1500brain.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500brain.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Brain_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "ebad86de5f66ad7589b619e60da720b2ccb7ecdb54e2b12968134ba389d60e93",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500brain.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5a823ddef3a2a930066a407e9a62a4077325ed7dd65b2fdd575c506ffee9317c
+size 10053

organagechronologicalolink1500conventional.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500conventional.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Conventional_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "4210c055c66e3524658f644e15088d4b625fd036db0633448d5b1715894b2b39",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500conventional.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:bb1560c45005876c78b22f6738e4f17b45c8fba1b337dc398bed16841982fea6
+size 69053

organagechronologicalolink1500esophagus.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500esophagus.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Esophagus_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "454e4cea77d66fb74ec90902b204089467b023e9a722a3486d08294dfcbb5ff8",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500esophagus.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:64fbad57fb003b6e86d69c13e540ff6e83aa570d7897334cfd4a2d313a6b1866
+size 8613

organagechronologicalolink1500female.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500female.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Female_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "46eb6482b740a30a0834c9d58073c745dee29889afa91dad625a5035dafea157",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500female.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:4c832d9cae0135376cf7cae25e053a4b0adb2bdc00a9773777343d174a2164ce
+size 8717

organagechronologicalolink1500heart.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500heart.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Heart_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "160ae26596c30eb80fa98450a3ee0ff5d2537c4e19925d603b56c124625bb95a",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500heart.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:5a1b00dc8087d5e9207a1a2c0018f46476da18c08727d40c6c17817973114ac5
+size 8645

organagechronologicalolink1500immune.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500immune.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Immune_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "253c563a99a39270ea633420eef93619be777642abaf0b860f84d8f182936474",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500immune.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:01c4b17c20eaf020fbd01d052a862fa0f523a83ed1fe0f4f765b1a61976a73b3
+size 11469

organagechronologicalolink1500intestine.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500intestine.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Intestine_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "274f061ce51a7eb0a7c20d9b2fec5cb86c69b69568be1b3aa6ddb863dda9b636",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500intestine.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:69c394c283066c6a4bedf4fb32efc8372a450759412ac3977500ed7dcc959ae1
+size 9125

organagechronologicalolink1500kidney.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500kidney.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Kidney_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "832d011d47d742b6b8a006e1b255293bff9c6c4e0658a6b0063f0f9c10e077e9",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500kidney.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:3349eda9c249fae72d61d265134e141c78fa45bb6ccaf6c4e9eaf5e22b7993de
+size 8717

organagechronologicalolink1500liver.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500liver.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Liver_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "97d475d5527764100c98d007dd1b852f83679c6be7ee54e8d1fc56230c054c77",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500liver.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7e853eff8efdd314be234f14c9079261e69915db582766ec2828a4c7b94671d3
+size 9413

organagechronologicalolink1500lung.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.

organagechronologicalolink1500lung.provenance.json

@@ -0,0 +1,9 @@
+{
+  "repository": "https://github.com/ludgergoeminne/organAging",
+  "commit": "5147b0301ec7f4abdb10ef650d04f47454ddc8fd",
+  "coefficient_path": "data/output_Python/feature_reduced/chronological_models/Lung_coefs_GTEx_4x_FC_longitudinal.csv",
+  "coefficient_sha256": "728ab265e0f811ad0fc7c843f10a42182257a4eed5ee3e08945a46d5e0d29bc8",
+  "prediction_code_path": "scripts/R/Example_Script.R",
+  "prediction_code_sha256": "02fc291721d6018bafa5a49adf4aff3841c7e9d085d682088b9ac0feeee31e63",
+  "fold": 1
+}

organagechronologicalolink1500lung.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d19b89b666587d6ef05ee6ec086b1f2169e158dc30ba3a35ffc6c6dc60cd23ee
+size 8829

organagechronologicalolink1500male.LICENSE.txt

@@ -0,0 +1,36 @@
+(Academic / Non-Commercial License)
+
+Copyright (c) 2025
+Ludger J.E. Goeminne and Vadim N. Gladyshev
+
+This software and its associated files (the “Software”) are licensed under a dual-license model:
+
+Academic / Non-Commercial License (this license)
+Commercial License (available separately)
+Permission is hereby granted, free of charge, to any individual or institution, to use, copy, modify, and distribute the Software solely for non-commercial academic or research purposes, subject to the following conditions:
+
+1. Non-Commercial Use Only
+The Software may not be used, in whole or in part, for any commercial purpose. Commercial purposes include, but are not limited to:
+
+Use in a commercial product or service
+Use by a for-profit entity for internal research or development
+Use to generate revenue, directly or indirectly
+Use in regulatory submissions or clinical decision support systems
+
+2. Attribution
+Any academic or research use of the Software must include appropriate citation of the following publication:
+
+Ludger J.E. Goeminne, Anastasiya Vladimirova, Alec Eames, Alexander Tyshkovskiy,
+M. Austin Argentieri, Kejun Ying, Mahdi Moqri, Vadim N. Gladyshev (2025).
+Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems,
+Cell Metabolism, Volume 37, Issue 1, p205–222.e6.
+DOI: https://doi.org/10.1016/j.cmet.2024.10.005
+
+3. No Warranty
+THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES, OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT, OR OTHERWISE, ARISING FROM, OUT OF, OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
+
+4. Third-Party Software
+The Software depends on third-party packages that are licensed under their own respective licenses. This license applies only to the original portions of the Software and does not override or modify the terms of any third-party licenses, including but not limited to GPL-licensed components.
+
+5. Commercial Licensing
+Any commercial use of the Software requires a separate commercial license. Interested parties should contact the copyright holders or their institutional technology transfer office to negotiate commercial licensing terms.