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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| myeloid cell | 66 | 0.99 | 0.93 | 0.98 | 0.83 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |\n| B cell | 51 | 0.99 | 0.97 | 0.98 | 0.76 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 43 | 0.99 | 1.00 | 1.00 | 0.61 | 0.00 | 1.00 | 1.00 | 0.98 | 1.00 |\n| mesenchymal stem cell of adipose tissue | 8 | 1.00 | 0.94 | 1.00 | 0.40 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |\n| T cell | 12 | 0.96 | 0.86 | 0.92 | 0.08 | 0.00 | 0.81 | 0.92 | 0.96 | 0.92 |\n| epithelial cell | 12 | 0.96 | 0.59 | 1.00 | 0.00 | 0.00 | 0.73 | 0.92 | 0.92 | 0.96 |\n| natural killer cell | 4 | 0.86 | 0.67 | 0.86 | 0.00 | 0.00 | 0.00 | 0.67 | 0.86 | 0.86 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| myeloid cell | 684 | 0.95 | 0.86 | 0.90 | 0.95 | 0.00 | 0.97 | 0.99 | 1.00 | 0.99 |\n| B cell | 470 | 0.97 | 0.91 | 0.94 | 0.94 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| endothelial cell | 365 | 0.97 | 0.96 | 0.95 | 0.92 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| mesenchymal stem cell of adipose tissue | 196 | 0.98 | 0.94 | 0.96 | 0.90 | 0.00 | 0.96 | 0.99 | 1.00 | 0.99 |\n| T cell | 141 | 0.90 | 0.88 | 0.90 | 0.72 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| epithelial cell | 101 | 0.94 | 0.47 | 0.92 | 0.87 | 0.00 | 0.94 | 1.00 | 1.00 | 0.99 |\n| natural killer cell | 43 | 0.73 | 0.71 | 0.72 | 0.49 | 0.00 | 0.94 | 0.99 | 1.00 | 1.00 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| myeloid cell | 72 | 0.95 | 0.94 | 0.98 | 0.92 | 0.00 | 0.94 | 0.99 | 0.96 | 0.99 |\n| B cell | 52 | 0.96 | 0.96 | 0.98 | 0.92 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| endothelial cell | 45 | 0.98 | 1.00 | 1.00 | 0.89 | 0.00 | 0.98 | 0.99 | 0.97 | 1.00 |\n| mesenchymal stem cell of adipose tissue | 8 | 0.93 | 0.94 | 1.00 | 0.57 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |\n| T cell | 14 | 0.93 | 0.87 | 0.88 | 0.33 | 0.00 | 0.85 | 0.97 | 1.00 | 0.97 |\n| epithelial cell | 12 | 0.96 | 0.67 | 1.00 | 0.42 | 0.00 | 0.77 | 0.96 | 0.92 | 0.96 |\n| natural killer cell | 3 | 0.80 | 0.50 | 0.00 | 0.50 | 0.00 | 0.44 | 0.80 | 1.00 | 0.80 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| myeloid cell | 684 | 0.96 | 0.86 | 0.90 | 0.97 | 0.00 | 0.96 | 1.00 | 1.00 | 0.99 |\n| B cell | 470 | 0.98 | 0.91 | 0.94 | 0.97 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |\n| endothelial cell | 366 | 0.97 | 0.96 | 0.95 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |\n| mesenchymal stem cell of adipose tissue | 196 | 0.98 | 0.94 | 0.96 | 0.95 | 0.00 | 0.94 | 1.00 | 1.00 | 0.99 |\n| T cell | 139 | 0.90 | 0.88 | 0.91 | 0.85 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |\n| epithelial cell | 101 | 0.97 | 0.47 | 0.93 | 0.84 | 0.00 | 0.93 | 1.00 | 1.00 | 1.00 |\n| natural killer cell | 44 | 0.71 | 0.71 | 0.73 | 0.72 | 0.00 | 0.78 | 1.00 | 1.00 | 0.98 |"
 }

celltypist.pkl

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harmony_knn_classifier.joblib

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popv_output/predictions.csv

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 index,popv_celltypist_prediction,popv_knn_bbknn_prediction,popv_knn_harmony_prediction,popv_knn_on_scvi_prediction,popv_onclass_prediction,popv_scanvi_prediction,popv_svm_prediction,popv_xgboost_prediction,popv_prediction,popv_prediction_score,popv_majority_vote_prediction,popv_majority_vote_score,popv_parent
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 E13_B000487_B008360_S109.mm10-plus-7-0,myeloid cell,myeloid cell,myeloid cell,myeloid cell,myeloid leukocyte,myeloid cell,myeloid cell,myeloid cell,myeloid cell,8,myeloid cell,8,myeloid cell
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-H13_B000487_B008360_S181.mm10-plus-7-0,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,B cell,B cell,B cell,B cell,8,B cell,8,B cell
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 M13_B000487_B008360_S301.mm10-plus-7-0,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,B cell,B cell,B cell,B cell,8,B cell,8,B cell
 M14_B000487_B008360_S302.mm10-plus-7-0,myeloid cell,myeloid cell,myeloid cell,myeloid cell,myeloid leukocyte,myeloid cell,myeloid cell,myeloid cell,myeloid cell,8,myeloid cell,8,myeloid cell
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 N10_B000487_B008360_S322.mm10-plus-7-0,myeloid cell,myeloid cell,myeloid cell,myeloid cell,myeloid leukocyte,myeloid cell,myeloid cell,myeloid cell,myeloid cell,8,myeloid cell,8,myeloid cell
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 O16_B000487_B008360_S352.mm10-plus-7-0,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,B cell,B cell,B cell,B cell,8,B cell,8,B cell
 O9_B000487_B008360_S345.mm10-plus-7-0,myeloid cell,myeloid cell,myeloid cell,myeloid cell,myeloid leukocyte,myeloid cell,myeloid cell,myeloid cell,myeloid cell,8,myeloid cell,8,myeloid cell
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 E12_B000834_S36_L004.mus-0-0-1,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,B cell,B cell,B cell,B cell,8,B cell,8,B cell
 E14_B000834_S38_L004.mus-0-0-1,myeloid cell,myeloid cell,myeloid cell,myeloid cell,myeloid leukocyte,myeloid cell,myeloid cell,myeloid cell,myeloid cell,8,myeloid cell,8,myeloid cell
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-C22.MAA000556.3_9_M.1.1-1-1,mesenchymal stem cell of adipose tissue,mesenchymal stem cell of adipose tissue,mesenchymal stem cell of adipose tissue,endothelial cell,mesenchymal stem cell of abdominal adipose tissue,mesenchymal stem cell of adipose tissue,mesenchymal stem cell of adipose tissue,mesenchymal stem cell of adipose tissue,mesenchymal stem cell of adipose tissue,7,mesenchymal stem cell of adipose tissue,7,mesenchymal stem cell of adipose tissue
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 H12.B001960.3_56_F.1.1-1-1,myeloid cell,myeloid cell,myeloid cell,myeloid cell,myeloid leukocyte,myeloid cell,myeloid cell,myeloid cell,myeloid cell,8,myeloid cell,8,myeloid cell
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 I13.MAA000556.3_9_M.1.1-1-1,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,B cell,B cell,B cell,B cell,8,B cell,8,B cell
-I20.B001960.3_56_F.1.1-1-1,endothelial cell,endothelial cell,endothelial cell,myeloid cell,endothelial cell of uterus,endothelial cell,endothelial cell,endothelial cell,endothelial cell,7,endothelial cell,7,endothelial cell
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 J11.MAA000556.3_9_M.1.1-1-1,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,B cell,B cell,B cell,B cell,8,B cell,8,B cell
 J13.B001960.3_56_F.1.1-1-1,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,B cell,B cell,B cell,B cell,8,B cell,8,B cell
 J2.MAA000442.3_11_M.1.1-1-1,endothelial cell,endothelial cell,endothelial cell,endothelial cell,endothelial cell of uterus,endothelial cell,endothelial cell,endothelial cell,endothelial cell,8,endothelial cell,8,endothelial cell
 J7.MAA000442.3_11_M.1.1-1-1,B cell,B cell,B cell,B cell,lymph node mantle zone B cell,natural killer cell,B cell,B cell,B cell,7,B cell,7,B cell
 K1.MAA000442.3_11_M.1.1-1-1,endothelial cell,endothelial cell,endothelial cell,endothelial cell,endothelial cell of uterus,endothelial cell,endothelial cell,endothelial cell,endothelial cell,8,endothelial cell,8,endothelial cell
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preprocessing.json

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