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README.md

@@ -6,7 +6,7 @@ tags:
 - genomics
 - single-cell
 - anndata_version:0.11.3
-- python_version:3.11.11
+- python_version:3.11.12
 - popV
 - 'tissue: brown adipose tissue'
 ---
@@ -32,25 +32,25 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| myeloid cell | 66 | 0.99 | 0.93 | 0.98 | 0.83 | 0.00 | 0.95 | 0.98 | 0.97 | 0.98 |
-| B cell | 51 | 0.99 | 0.97 | 0.98 | 0.76 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
-| endothelial cell | 43 | 0.99 | 1.00 | 1.00 | 0.61 | 0.00 | 1.00 | 1.00 | 0.98 | 1.00 |
-| mesenchymal stem cell of adipose tissue | 8 | 1.00 | 0.94 | 1.00 | 0.40 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |
-| T cell | 12 | 0.96 | 0.86 | 0.92 | 0.08 | 0.00 | 0.81 | 0.92 | 0.96 | 0.92 |
-| epithelial cell | 12 | 0.96 | 0.59 | 1.00 | 0.00 | 0.00 | 0.73 | 0.92 | 0.92 | 0.96 |
-| natural killer cell | 4 | 0.86 | 0.67 | 0.86 | 0.00 | 0.00 | 0.00 | 0.67 | 0.86 | 0.86 |
+| myeloid cell | 72 | 0.95 | 0.94 | 0.98 | 0.92 | 0.00 | 0.94 | 0.99 | 0.96 | 0.99 |
+| B cell | 52 | 0.96 | 0.96 | 0.98 | 0.92 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
+| endothelial cell | 45 | 0.98 | 1.00 | 1.00 | 0.89 | 0.00 | 0.98 | 0.99 | 0.97 | 1.00 |
+| mesenchymal stem cell of adipose tissue | 8 | 0.93 | 0.94 | 1.00 | 0.57 | 0.00 | 0.89 | 1.00 | 1.00 | 1.00 |
+| T cell | 14 | 0.93 | 0.87 | 0.88 | 0.33 | 0.00 | 0.85 | 0.97 | 1.00 | 0.97 |
+| epithelial cell | 12 | 0.96 | 0.67 | 1.00 | 0.42 | 0.00 | 0.77 | 0.96 | 0.92 | 0.96 |
+| natural killer cell | 3 | 0.80 | 0.50 | 0.00 | 0.50 | 0.00 | 0.44 | 0.80 | 1.00 | 0.80 |
 
 The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| myeloid cell | 684 | 0.95 | 0.86 | 0.90 | 0.95 | 0.00 | 0.97 | 0.99 | 1.00 | 0.99 |
-| B cell | 470 | 0.97 | 0.91 | 0.94 | 0.94 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
-| endothelial cell | 365 | 0.97 | 0.96 | 0.95 | 0.92 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
-| mesenchymal stem cell of adipose tissue | 196 | 0.98 | 0.94 | 0.96 | 0.90 | 0.00 | 0.96 | 0.99 | 1.00 | 0.99 |
-| T cell | 141 | 0.90 | 0.88 | 0.90 | 0.72 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |
-| epithelial cell | 101 | 0.94 | 0.47 | 0.92 | 0.87 | 0.00 | 0.94 | 1.00 | 1.00 | 0.99 |
-| natural killer cell | 43 | 0.73 | 0.71 | 0.72 | 0.49 | 0.00 | 0.94 | 0.99 | 1.00 | 1.00 |
+| myeloid cell | 684 | 0.96 | 0.86 | 0.90 | 0.97 | 0.00 | 0.96 | 1.00 | 1.00 | 0.99 |
+| B cell | 470 | 0.98 | 0.91 | 0.94 | 0.97 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
+| endothelial cell | 366 | 0.97 | 0.96 | 0.95 | 0.97 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
+| mesenchymal stem cell of adipose tissue | 196 | 0.98 | 0.94 | 0.96 | 0.95 | 0.00 | 0.94 | 1.00 | 1.00 | 0.99 |
+| T cell | 139 | 0.90 | 0.88 | 0.91 | 0.85 | 0.00 | 0.97 | 1.00 | 1.00 | 0.99 |
+| epithelial cell | 101 | 0.97 | 0.47 | 0.93 | 0.84 | 0.00 | 0.93 | 1.00 | 1.00 | 1.00 |
+| natural killer cell | 44 | 0.71 | 0.71 | 0.73 | 0.72 | 0.00 | 0.78 | 1.00 | 1.00 | 0.98 |
 
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