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popV
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tabula_muris_Mammary_gland_10x

Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Mus musculus
Python:3.12.8
popV:0.6.0
tissue: mammary gland
Model card Files
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 Community
canergen commited on
Commit
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Files changed (18) hide show
  1. .gitattributes +1 -0
  2. OnClass.data-00000-of-00001 +3 -0
  3. OnClass.index +0 -0
  4. OnClass.meta +0 -0
  5. OnClass.npz +3 -0
  6. accuracies.json +4 -0
  7. celltypist.pkl +3 -0
  8. checkpoint +2 -0
  9. harmony_knn_classifier.joblib +3 -0
  10. obo_dag.joblib +3 -0
  11. popv_output/predictions.csv +0 -0
  12. preprocessing.json +0 -0
  13. pynndescent_index.joblib +3 -0
  14. scanvi/model.pt +3 -0
  15. scvi/model.pt +3 -0
  16. scvi_knn_classifier.joblib +3 -0
  17. svm_classifier_cuml.joblib +3 -0
  18. xgboost_classifier.model +3 -0
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OnClass.index ADDED
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+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| T cell | 312 | 1.00 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| stromal cell | 261 | 0.99 | 1.00 | 0.99 | 1.00 | 0.00 | 0.98 | 1.00 | 0.99 | 1.00 |\n| luminal epithelial cell of mammary gland | 206 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 1.00 | 0.99 | 0.99 | 0.99 |\n| B cell | 176 | 1.00 | 0.98 | 0.99 | 0.98 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |\n| basal cell | 164 | 0.97 | 0.99 | 0.99 | 1.00 | 0.00 | 0.98 | 0.99 | 0.98 | 1.00 |\n| endothelial cell | 56 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 1.00 | 0.99 |\n| macrophage | 55 | 0.95 | 0.97 | 0.94 | 0.91 | 0.00 | 0.95 | 0.96 | 0.95 | 0.96 |",
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+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| T cell | 2908 | 0.99 | 0.99 | 1.00 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| stromal cell | 2522 | 0.99 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| luminal epithelial cell of mammary gland | 1697 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| B cell | 1456 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| basal cell | 1423 | 0.99 | 1.00 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| endothelial cell | 595 | 0.99 | 0.99 | 1.00 | 1.00 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |\n| macrophage | 464 | 0.94 | 0.95 | 0.97 | 0.93 | 0.00 | 0.95 | 0.96 | 0.94 | 0.97 |"
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