Hugging Face's logo

popV
/
tabula_sapiens_Germline

Joblib
popV
biology
genomics
single-cell
AnnData:0.12.2
scikit_learn:1.7.2
organism:Homo sapiens
Python:3.12.8
popV:0.6.0
tissue: Testis
tissue: Ovary
Model card Files
xet
 Community
canergen commited on
Commit
c6c09d0
·
verified ·
1 Parent(s): 4173596

popV version: 0.6.0

Browse files
Files changed (23) hide show
  1. OnClass.data-00000-of-00001 +1 -1
  2. OnClass.index +0 -0
  3. OnClass.meta +0 -0
  4. OnClass.npz +2 -2
  5. README.md +0 -0
  6. accuracies.json +2 -2
  7. celltypist.pkl +1 -1
  8. faiss_index.faiss +0 -0
  9. faiss_index.index +1 -1
  10. harmony_knn_classifier.index +1 -1
  11. harmony_knn_classifier.joblib +0 -0
  12. metadata.json +0 -0
  13. minified_ref_adata.h5ad +0 -0
  14. popv_output/predictions.csv +0 -0
  15. preprocessing.json +0 -0
  16. ref_labels.csv +0 -0
  17. scanvi/model.pt +1 -1
  18. scvi/model.pt +1 -1
  19. scvi_knn_classifier.index +1 -1
  20. scvi_knn_classifier.joblib +0 -0
  21. svm_classifier.joblib +1 -1
  22. svm_classifier_cuml.joblib +0 -0
  23. xgboost_classifier.model +2 -2
OnClass.data-00000-of-00001 CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:420a4cc1926222f6090dd4caafda63ab337c09f39ac12c71d150e08a14d394ee
3
  size 27239224
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ed9b48fb9a606e6a08bccc9e911f08ad543702d81f7e281378ef1a434850eab8
3
  size 27239224
OnClass.index CHANGED
Binary files a/OnClass.index and b/OnClass.index differ
 
OnClass.meta CHANGED
Binary files a/OnClass.meta and b/OnClass.meta differ
 
OnClass.npz CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:e457bc68799689f57f4bd350c21b52c7a6a64984874144e1a230358b2ed6f0fa
3
- size 144112689
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c3ef7e6b4e5dfc0c81b8660421772539738b5bdf243cf9e883e8035fd5152bad
3
+ size 144112694
README.md DELETED
File without changes
accuracies.json CHANGED
@@ -1,4 +1,4 @@
1
  {
2
- "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 394 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |\n| spermatocyte | 315 | 0.97 | 0.98 | 0.98 | 0.98 | 0.00 | 0.96 | 0.99 | 0.96 | 0.99 |\n| male germ cell | 11 | 0.96 | 0.92 | 0.96 | 1.00 | 0.00 | 0.96 | 1.00 | 0.95 | 1.00 |\n| spermatogonium | 7 | 0.86 | 0.77 | 0.77 | 0.77 | 0.00 | 0.93 | 0.86 | 0.75 | 0.77 |",
3
- "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3615 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 2755 | 0.97 | 0.99 | 0.98 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.99 |\n| male germ cell | 105 | 0.96 | 0.98 | 0.97 | 0.97 | 0.00 | 0.85 | 1.00 | 1.00 | 0.99 |\n| spermatogonium | 57 | 0.82 | 0.96 | 0.84 | 0.86 | 0.00 | 0.89 | 0.97 | 0.90 | 0.96 |"
4
  }
 
1
  {
2
+ "query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 402 | 0.98 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 1.00 | 0.98 | 1.00 |\n| spermatocyte | 308 | 0.97 | 0.98 | 0.98 | 0.97 | 0.00 | 0.97 | 0.99 | 0.96 | 0.99 |\n| male germ cell | 8 | 1.00 | 1.00 | 1.00 | 1.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |\n| spermatogonium | 9 | 0.80 | 0.71 | 0.62 | 0.62 | 0.00 | 0.75 | 0.84 | 0.63 | 0.71 |",
3
+ "ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| spermatid | 3607 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| spermatocyte | 2762 | 0.97 | 0.99 | 0.99 | 0.98 | 0.00 | 0.97 | 0.98 | 0.97 | 0.99 |\n| male germ cell | 108 | 0.95 | 0.99 | 0.96 | 0.96 | 0.00 | 0.96 | 1.00 | 0.98 | 0.99 |\n| spermatogonium | 55 | 0.80 | 0.95 | 0.83 | 0.87 | 0.00 | 0.81 | 0.96 | 0.87 | 0.94 |"
4
  }
celltypist.pkl CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:d149bed1e77aae27b4c355c7300efc0c47088e55be1984e7a05304509ccfbe55
3
  size 233270
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d15b82f674958a66ffd81b62921ff89404679dc6d0ad4dac6c30c1546b9013b6
3
  size 233270
faiss_index.faiss DELETED
File without changes
faiss_index.index CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:c75ea27e5e7e55345b71cd2383820398a4f5ab503d080775ca3fca9ca8b6f84f
3
  size 1309645
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:382bf8e8e7f416cc8f1c98e188486c2e4669708139123a79e53d28281cd4df94
3
  size 1309645
harmony_knn_classifier.index CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:c832530e92032415417f7c7129b6185c09b5480df3263b8954bf3faa12dacb22
3
  size 1306445
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:756c1658e18b8370d0d69f312382406c2f6dc0472ebbcb690e15658f92c8bbda
3
  size 1306445
harmony_knn_classifier.joblib DELETED
File without changes
metadata.json DELETED
File without changes
minified_ref_adata.h5ad DELETED
File without changes
popv_output/predictions.csv CHANGED
The diff for this file is too large to render. See raw diff
 
preprocessing.json CHANGED
The diff for this file is too large to render. See raw diff
 
ref_labels.csv CHANGED
The diff for this file is too large to render. See raw diff
 
scanvi/model.pt CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:4c251986370c1a5a0adfbf920785915dd71992eda55fadd5d1584dd42b821b66
3
  size 11344629
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:7eb7ab9edaf3285ea4b8c327c107e619680cc2ca08b3a6d910d60ab47131a4a3
3
  size 11344629
scvi/model.pt CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:6e23b1f52d4aeb0e45ff48b5b71f29eed04c417b8244dc13955812504ff0aa20
3
  size 10828742
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:41d7b6317e3de2d58d565cd29da89daea81c849a74e5113006d2c2ae97f0c1f6
3
  size 10828742
scvi_knn_classifier.index CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:67e787c6f968c5c1141af706e85c23c4a5e107b04d4bbcf44d1c09a10bbaa4c3
3
  size 522605
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1f7b5dd9e32d33ef28477b204c26fb040f242f58ac59292219db1c96a8252693
3
  size 522605
scvi_knn_classifier.joblib DELETED
File without changes
svm_classifier.joblib CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:6a215b41654c945f304ad419e276dc756b776694909e2bf7b6e9d32df3c1e925
3
  size 65376
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ea6c2c28aa260c28f4b50690a00016108a1c97e67d719ed26d63bfe4f7234fea
3
  size 65376
svm_classifier_cuml.joblib DELETED
File without changes
xgboost_classifier.model CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:fca236ffecd060cde0192cbc687407e3b93c445a19b6821d8e323e300ed2ce62
3
- size 937209
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a4570c2dd0bd2d060bc854fb8cfb5ce04549f678d45cfdbdd5231ba4fa68b8ba
3
+ size 939455