| { | |
| "popv_version": "0.5.0", | |
| "anndata_version": "0.11.3", | |
| "setup_dict": { | |
| "ref_labels_key": "popv_labels", | |
| "ref_batch_key": "batch_key", | |
| "unknown_celltype_label": "unassigned" | |
| }, | |
| "prediction_keys": [ | |
| "popv_celltypist_prediction", | |
| "popv_knn_bbknn_prediction", | |
| "popv_knn_harmony_prediction", | |
| "popv_knn_on_scvi_prediction", | |
| "popv_onclass_prediction", | |
| "popv_scanvi_prediction", | |
| "popv_svm_prediction", | |
| "popv_xgboost_prediction" | |
| ], | |
| "method_kwargs": { | |
| "svm": { | |
| "train_both": true | |
| } | |
| }, | |
| "methods": [ | |
| "CELLTYPIST", | |
| "KNN_BBKNN", | |
| "KNN_HARMONY", | |
| "KNN_SCVI", | |
| "ONCLASS", | |
| "SCANVI_POPV", | |
| "Support_Vector", | |
| "XGboost" | |
| ], | |
| "cellxgene_url": "https://cellxgene.cziscience.com/e/7357cee7-9f7f-4ab0-8cec-90de8f047e38.cxg/" | |
| } |