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license: apache-2.0
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---
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license: apache-2.0
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This repository is a fork of the DNABERT-S repository: https://huggingface.co/zhihan1996/DNABERT-S. It is modified to not load FlashAttention, which uses an outdated and no longer available version of Triton. While the standard protocol is to simply uninstall Trition when using DNABERT-S, this is not ideal for integrating DNABERT-S into a package.
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If you use this model please provide attribution to:
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```
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@misc{zhou2024dnaberts,
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title={DNABERT-S: Learning Species-Aware DNA Embedding with Genome Foundation Models},
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author={Zhihan Zhou and Winmin Wu and Harrison Ho and Jiayi Wang and Lizhen Shi and Ramana V Davuluri and Zhong Wang and Han Liu},
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year={2024},
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eprint={2402.08777},
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archivePrefix={arXiv},
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primaryClass={q-bio.GN}
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}
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```
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Original Github: https://github.com/MAGICS-LAB/DNABERT_S
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Original HF repo: https://huggingface.co/zhihan1996/DNABERT-S
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Original paper: https://arxiv.org/abs/2402.08777
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