Upload README.md with huggingface_hub

README.md

@@ -6,8 +6,8 @@ tags:
 - genomics
 - single-cell
 - model_cls_name:RNAStereoscope
-- scvi_version:1.2.0
-- anndata_version:0.11.1
+- scvi_version:1.4.2
+- anndata_version:0.12.7
 - modality:rna
 - tissue:various
 - annotated:True
@@ -22,7 +22,7 @@ predicts the cell-type proportions in the spatial data.
 Stereoscope takes as input a scRNA-seq gene expression matrix with cells and genes as well as a
 cell-type annotation for all cells.
 We provide an extensive for DestVI including a description of CondSCVI
-[user guide](https://docs.scvi-tools.org/en/1.2.0/user_guide/models/destvi.html).
+[user guide](https://docs.scvi-tools.org/en/stable/user_guide/models/destvi.html).
 
 - See our original manuscript for further details of the model:
 [Stereoscope manuscript](https://www.nature.com/articles/s42003-020-01247-y) as well as the
@@ -96,8 +96,8 @@ These provide the settings to setup the original model:
 Arguments passed to setup_anndata of the original model:
 ```json
 {
-    "labels_key": "cell_ontology_class",
-    "layer": null
+    "labels_key": "cell_type",
+    "layer": "counts"
 }
 ```
 
@@ -107,10 +107,10 @@ Arguments passed to setup_anndata of the original model:
 <summary><strong>Data Registry</strong></summary>
 
 Registry elements for AnnData manager:
-| Registry Key |    scvi-tools Location    |
-|--------------|---------------------------|
-|      X       |          adata.X          |
-|    labels    | adata.obs['_scvi_labels'] |
+| Registry Key             | scvi-tools Location                  |
+|--------------------------|--------------------------------------|
+| X                         | adata.layers['counts']               |
+| labels                    | adata.obs['_scvi_labels']            |
 
 - **Data is Minified**: False
 
@@ -119,11 +119,11 @@ Registry elements for AnnData manager:
 <details>
 <summary><strong>Summary Statistics</strong></summary>
 
-| Summary Stat Key | Value |
-|------------------|-------|
-|     n_cells      | 20259 |
-|     n_labels     |  12   |
-|      n_vars      | 3000  |
+| Summary Stat Key          | Value |
+|--------------------------|-------|
+| n_cells                   | 94415 |
+| n_labels                  | 28 |
+| n_vars                    | 3000 |
 
 </details>