Upload main.py with huggingface_hub
Browse files
main.py
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""
|
| 2 |
+
Pipeline Deep Learning — Análise de Escoliose (regressão de ângulos de Cobb)
|
| 3 |
+
|
| 4 |
+
Uso (treino):
|
| 5 |
+
python main.py --mode train --data_root ./data --epochs 100
|
| 6 |
+
|
| 7 |
+
Uso (teste):
|
| 8 |
+
python main.py --mode test --data_root ./data --ckpt results/scoliosis_hrnet/best.pth
|
| 9 |
+
|
| 10 |
+
Uso (inferência numa imagem):
|
| 11 |
+
python main.py --mode infer --image rx.jpg --ckpt results/scoliosis_hrnet/best.pth
|
| 12 |
+
"""
|
| 13 |
+
|
| 14 |
+
import argparse
|
| 15 |
+
import json
|
| 16 |
+
import sys
|
| 17 |
+
from pathlib import Path
|
| 18 |
+
|
| 19 |
+
import torch
|
| 20 |
+
import cv2
|
| 21 |
+
import albumentations as A
|
| 22 |
+
from albumentations.pytorch import ToTensorV2
|
| 23 |
+
|
| 24 |
+
sys.path.insert(0, str(Path(__file__).parent))
|
| 25 |
+
|
| 26 |
+
from data.dataset import build_dataloaders, IMAGE_SIZE
|
| 27 |
+
from models.hrnet import build_model
|
| 28 |
+
from train import train, evaluate_test, DEFAULT_CONFIG
|
| 29 |
+
|
| 30 |
+
|
| 31 |
+
def severity(angle):
|
| 32 |
+
if angle < 10: return "Normal"
|
| 33 |
+
if angle < 25: return "Leve"
|
| 34 |
+
if angle < 40: return "Moderada"
|
| 35 |
+
return "Grave"
|
| 36 |
+
|
| 37 |
+
|
| 38 |
+
@torch.no_grad()
|
| 39 |
+
def infer_single_image(image_path, ckpt_path, arch="hrnet", show=False):
|
| 40 |
+
device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 41 |
+
|
| 42 |
+
model = build_model(arch=arch, num_outputs=3)
|
| 43 |
+
ckpt = torch.load(ckpt_path, map_location=device)
|
| 44 |
+
model.load_state_dict(ckpt["model"])
|
| 45 |
+
model = model.to(device).eval()
|
| 46 |
+
|
| 47 |
+
img = cv2.imread(image_path, cv2.IMREAD_GRAYSCALE)
|
| 48 |
+
assert img is not None, f"Não foi possível ler: {image_path}"
|
| 49 |
+
img = cv2.cvtColor(img, cv2.COLOR_GRAY2RGB)
|
| 50 |
+
|
| 51 |
+
transform = A.Compose([
|
| 52 |
+
A.CLAHE(clip_limit=3.0, p=1.0),
|
| 53 |
+
A.Resize(IMAGE_SIZE, IMAGE_SIZE),
|
| 54 |
+
A.Normalize(mean=(0.485, 0.456, 0.406), std=(0.229, 0.224, 0.225)),
|
| 55 |
+
ToTensorV2(),
|
| 56 |
+
])
|
| 57 |
+
tensor = transform(image=img)["image"].unsqueeze(0).to(device)
|
| 58 |
+
|
| 59 |
+
angles = model(tensor)[0].cpu().tolist()
|
| 60 |
+
labels = ["Torácico proximal", "Torácico principal", "Lombar"]
|
| 61 |
+
|
| 62 |
+
print("\n── Ângulos de Cobb ──")
|
| 63 |
+
for label, angle in zip(labels, angles):
|
| 64 |
+
print(f" {label}: {angle:.1f}° — {severity(angle)}")
|
| 65 |
+
|
| 66 |
+
return angles
|
| 67 |
+
|
| 68 |
+
|
| 69 |
+
def parse_args():
|
| 70 |
+
p = argparse.ArgumentParser()
|
| 71 |
+
p.add_argument("--mode", choices=["train", "test", "infer"], default="train")
|
| 72 |
+
p.add_argument("--data_root", type=str, default="./data")
|
| 73 |
+
p.add_argument("--arch", type=str, default="hrnet")
|
| 74 |
+
p.add_argument("--epochs", type=int, default=100)
|
| 75 |
+
p.add_argument("--batch", type=int, default=8)
|
| 76 |
+
p.add_argument("--lr", type=float, default=1e-3)
|
| 77 |
+
p.add_argument("--image", type=str, default=None)
|
| 78 |
+
p.add_argument("--ckpt", type=str, default=None)
|
| 79 |
+
p.add_argument("--exp_name", type=str, default="scoliosis_hrnet")
|
| 80 |
+
p.add_argument("--resume", type=str, default=None)
|
| 81 |
+
p.add_argument("--show", action="store_true")
|
| 82 |
+
return p.parse_args()
|
| 83 |
+
|
| 84 |
+
|
| 85 |
+
def main():
|
| 86 |
+
args = parse_args()
|
| 87 |
+
cfg = {**DEFAULT_CONFIG,
|
| 88 |
+
"arch": args.arch, "epochs": args.epochs,
|
| 89 |
+
"batch_size": args.batch, "lr": args.lr,
|
| 90 |
+
"exp_name": args.exp_name}
|
| 91 |
+
|
| 92 |
+
if args.mode == "train":
|
| 93 |
+
print(f"\n== Modo: TREINO | {args.epochs} epochs ==")
|
| 94 |
+
train_loader, val_loader, test_loader = build_dataloaders(
|
| 95 |
+
args.data_root, cfg["batch_size"], cfg["num_workers"])
|
| 96 |
+
model = build_model(arch=cfg["arch"], num_outputs=cfg["num_outputs"])
|
| 97 |
+
history = train(model, train_loader, val_loader, cfg, resume_ckpt=args.resume)
|
| 98 |
+
best = str(Path(cfg["output_dir"]) / cfg["exp_name"] / "best.pth")
|
| 99 |
+
evaluate_test(model, test_loader, cfg, ckpt_path=best)
|
| 100 |
+
|
| 101 |
+
elif args.mode == "test":
|
| 102 |
+
assert args.ckpt, "Forneça --ckpt"
|
| 103 |
+
_, _, test_loader = build_dataloaders(
|
| 104 |
+
args.data_root, cfg["batch_size"], cfg["num_workers"])
|
| 105 |
+
model = build_model(arch=cfg["arch"], num_outputs=cfg["num_outputs"])
|
| 106 |
+
results = evaluate_test(model, test_loader, cfg, ckpt_path=args.ckpt)
|
| 107 |
+
out = Path(cfg["output_dir"]) / cfg["exp_name"] / "test_results.json"
|
| 108 |
+
out.parent.mkdir(parents=True, exist_ok=True)
|
| 109 |
+
with open(out, "w") as f:
|
| 110 |
+
json.dump(results, f, indent=2)
|
| 111 |
+
|
| 112 |
+
elif args.mode == "infer":
|
| 113 |
+
assert args.image and args.ckpt, "Forneça --image e --ckpt"
|
| 114 |
+
infer_single_image(args.image, args.ckpt, args.arch, args.show)
|
| 115 |
+
|
| 116 |
+
|
| 117 |
+
if __name__ == "__main__":
|
| 118 |
+
main()
|