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Initial demo: side-by-side fill-mask comparison vioBERT-v3 vs MARBERTv2
Browse files- README.md +32 -7
- app.py +111 -0
- requirements.txt +4 -0
README.md
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---
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title:
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sdk: gradio
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app_file: app.py
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---
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-
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---
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title: vioBERT-v3 Live Demo
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emoji: 🩺
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colorFrom: green
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colorTo: blue
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sdk: gradio
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sdk_version: 4.44.0
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app_file: app.py
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pinned: true
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license: apache-2.0
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short_description: Live fill-mask — vioBERT-v3 vs MARBERTv2
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tags:
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- arabic
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- medical
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- bert
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- fill-mask
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- clinical-nlp
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- domain-adaptation
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- mena
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models:
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- Vionex-digital/vioBERT-v3
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- UBC-NLP/MARBERTv2
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---
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# vioBERT-v3 Live Demo
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Side-by-side fill-mask comparison: **vioBERT-v3** (Arabic medical BERT, MARBERTv2 + DAPT on 1.12M medical docs) vs **MARBERTv2** (base, trained on 1B Arabic tweets).
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## What you'll see
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Type an Arabic sentence with `[MASK]`. Both models predict the masked token. On medical content, vioBERT-v3 fills with anatomy / drugs / conditions; MARBERTv2 often fills with politics / sports / news terms (its training distribution).
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## Why it matters
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There are 422M Arabic speakers and previously zero strong open biomedical Arabic LM. vioBERT-v3 is the first. Apache-2.0 — fine-tune commercially without asking.
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📦 [Model card →](https://huggingface.co/Vionex-digital/vioBERT-v3)
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app.py
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"""vioBERT-v3 vs MARBERTv2 — side-by-side fill-mask demo.
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Visitors see *why* domain adaptation matters for Arabic medical NLP in
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real time, on their own sentences. This is the marketing artifact —
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benchmarks on a model card don't convince like a live A/B does.
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"""
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import gradio as gr
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from transformers import AutoModelForMaskedLM, AutoTokenizer
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import torch
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import time
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VIOBERT_ID = "Vionex-digital/vioBERT-v3"
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BASE_ID = "UBC-NLP/MARBERTv2"
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print("[boot] loading models...")
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t0 = time.time()
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viobert_tok = AutoTokenizer.from_pretrained(VIOBERT_ID)
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viobert = AutoModelForMaskedLM.from_pretrained(VIOBERT_ID).eval()
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base_tok = AutoTokenizer.from_pretrained(BASE_ID)
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base = AutoModelForMaskedLM.from_pretrained(BASE_ID).eval()
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print(f"[boot] models loaded in {time.time()-t0:.1f}s")
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def fill_mask(model, tok, text, top_k=5):
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if "[MASK]" not in text and tok.mask_token not in text:
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return [("⚠️ add [MASK] in the sentence", 0.0)]
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text = text.replace("[MASK]", tok.mask_token)
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inputs = tok(text, return_tensors="pt")
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mask_idx = (inputs["input_ids"][0] == tok.mask_token_id).nonzero(as_tuple=True)[0]
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if len(mask_idx) == 0:
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return [("⚠️ no [MASK] found", 0.0)]
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with torch.no_grad():
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logits = model(**inputs).logits[0, mask_idx[0]]
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probs = torch.softmax(logits, dim=-1)
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top = torch.topk(probs, top_k)
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return [(tok.decode(t).strip(), float(s)) for t, s in zip(top.indices, top.values)]
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def compare(text):
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if not text.strip():
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return "👈 Enter an Arabic sentence with [MASK]", "👈 Enter an Arabic sentence with [MASK]"
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vio = fill_mask(viobert, viobert_tok, text)
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bas = fill_mask(base, base_tok, text)
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def fmt(rows, label, color):
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lines = [f"### {label}"]
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for tok_str, score in rows:
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bar = "█" * int(score * 30)
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lines.append(f"`{tok_str}` **{score:.3f}** <span style='color:{color}'>{bar}</span>")
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return "\n\n".join(lines)
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return fmt(vio, "🩺 vioBERT-v3 (medical-adapted)", "#16a34a"), fmt(bas, "📰 MARBERTv2 (base, tweets)", "#64748b")
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EXAMPLES = [
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["المريض يعاني من [MASK] في الصدر"],
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["تم تشخيص الحالة على أنها [MASK] من النوع الثاني"],
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["الجرعة الموصى بها للأطفال هي [MASK] ملليجرام"],
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["تظهر صورة الأشعة وجود [MASK] في الرئة اليمنى"],
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["يحتاج المريض إلى [MASK] فوري في غرفة العمليات"],
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["ارتفاع [MASK] الدم قد يؤدي إلى السكتة الدماغية"],
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]
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CSS = """
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.gradio-container {max-width: 1100px !important;}
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.markdown-text {direction: rtl; text-align: right; font-size: 1.1em;}
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"""
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DESCRIPTION = """
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# 🩺 vioBERT-v3 vs MARBERTv2 — live fill-mask comparison
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**vioBERT-v3** is the first Arabic medical BERT — MARBERTv2 + 22K steps of continued pretraining
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on **Shifaa**, our 1.12M-document Arabic medical corpus.
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This Space lets you see the difference live. Type any Arabic sentence with `[MASK]`,
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get top-5 predictions from both models side-by-side. Medical sentences are where the
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gap is widest.
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Benchmarks vs MARBERTv2: −82.7% medical PPL · +15.6 pp fill-mask Top-5 ·
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+0.93 pp medical NER F1 *(exceeds the +0.62 pp BioBERT got on English)*
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📦 [Model](https://huggingface.co/Vionex-digital/vioBERT-v3) ·
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🏥 [Vionex Digital Solutions](https://huggingface.co/Vionex-digital) ·
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📜 Apache-2.0 · free for commercial use
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"""
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with gr.Blocks(css=CSS, theme=gr.themes.Soft(primary_hue="green")) as demo:
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gr.Markdown(DESCRIPTION)
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with gr.Row():
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text = gr.Textbox(
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label="Arabic medical sentence with [MASK]",
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placeholder="المريض يعاني من [MASK] في الصدر",
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rtl=True,
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lines=2,
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)
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with gr.Row():
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btn = gr.Button("🔍 Compare predictions", variant="primary", scale=1)
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with gr.Row():
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vio_out = gr.Markdown(label="vioBERT-v3", elem_classes="markdown-text")
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base_out = gr.Markdown(label="MARBERTv2", elem_classes="markdown-text")
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gr.Examples(examples=EXAMPLES, inputs=text, label="Try a medical example")
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btn.click(fn=compare, inputs=text, outputs=[vio_out, base_out])
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text.submit(fn=compare, inputs=text, outputs=[vio_out, base_out])
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gr.Markdown(
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"---\n*Built by Vionex Digital Solutions · "
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"Domain-adaptive pretraining for Arabic medical NLP. "
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"If this is useful, give vioBERT a like on its [model page](https://huggingface.co/Vionex-digital/vioBERT-v3) or cite the upcoming paper.*"
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)
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if __name__ == "__main__":
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demo.launch()
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requirements.txt
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transformers>=4.44.0
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torch>=2.0
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gradio>=4.44.0
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sentencepiece
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