Fixed lungmasking [no ci]

Added feature to set batch-size through args [no ci]

Swapped 3D with 2D closing operation [no ci]

Support for setting closing smoothing radius [no ci]

Threshold default 0.5 + morphology post-processing smoothing step

Changed thresholding/resampling order step

Fixed dtype to threshold arg

Support for setting threshold through argparse

Fixed typo in argparse method

Fixed typo in lung-filter argparse

Added lungmask filtering CI job

Added support to state whether to filter lungs or not - default no

Refactored confidence map thresholding code [no ci]

Fixed postprocessing typo in lungmask usage

refactored

added lung mask postprocessing of tumor volume

cast output to uint8, removed redundancy in .gitignore, refactored CI

added more verbose and refactored

added else statement

typo

enable dynamic selection of CUDA GPU only if available, else GPU inference

Implement as command line tool

Remove main method

Initial working pipeline

Initial pre and post implementation