Support for setting closing smoothing radius [no ci]

Changed thresholding/resampling order step

Support for setting threshold through argparse

Added support to state whether to filter lungs or not - default no

Refactored confidence map thresholding code [no ci]

Fixed postprocessing typo in lungmask usage

added lung mask postprocessing of tumor volume

added more verbose and refactored

added else statement

typo

enable dynamic selection of CUDA GPU only if available, else GPU inference

Implement as command line tool

Remove main method

Initial working pipeline

Initial pre and post implementation