data/wgs_sequencing_metrics.json

{
  "instrument": "Illumina NovaSeq 6000",
  "flowcell_id": "HGWCNDSX7",
  "sample_id": "EX2312012 (S16)",
  "read_type": "Paired-End 2x150bp",
  "total_sequencing_data_gb": 78.86,
  "lanes": [
    {
      "lane": "L001",
      "r1_file": "WGS_EX2312012_HGWCNDSX7_S16_L001_R1_001.fastq.gz",
      "r1_size_gb": 9.75,
      "r2_file": "WGS_EX2312012_HGWCNDSX7_S16_L001_R2_001.fastq.gz",
      "r2_size_gb": 10.28,
      "total_reads_m": 204.5,
      "q30_pct": 93.4,
      "mean_coverage": 9.2
    },
    {
      "lane": "L002",
      "r1_file": "WGS_EX2312012_HGWCNDSX7_S16_L002_R1_001.fastq.gz",
      "r1_size_gb": 9.66,
      "r2_file": "WGS_EX2312012_HGWCNDSX7_S16_L002_R2_001.fastq.gz",
      "r2_size_gb": 10.16,
      "total_reads_m": 202.1,
      "q30_pct": 93.1,
      "mean_coverage": 9.0
    },
    {
      "lane": "L003",
      "r1_file": "WGS_EX2312012_HGWCNDSX7_S16_L003_R1_001.fastq.gz",
      "r1_size_gb": 9.5,
      "r2_file": "WGS_EX2312012_HGWCNDSX7_S16_L003_R2_001.fastq.gz",
      "r2_size_gb": 9.89,
      "total_reads_m": 198.8,
      "q30_pct": 93.8,
      "mean_coverage": 8.9
    },
    {
      "lane": "L004",
      "r1_file": "WGS_EX2312012_HGWCNDSX7_S16_L004_R1_001.fastq.gz",
      "r1_size_gb": 9.6,
      "r2_file": "WGS_EX2312012_HGWCNDSX7_S16_L004_R2_001.fastq.gz",
      "r2_size_gb": 10.02,
      "total_reads_m": 200.4,
      "q30_pct": 93.5,
      "mean_coverage": 9.1
    }
  ],
  "aggregate": {
    "total_paired_reads_m": 805.8,
    "mean_target_coverage": "36.2x",
    "percent_bases_q30": "93.45%",
    "mean_insert_size": "380 bp",
    "gc_content": "41.2%",
    "duplication_rate": "8.4%"
  }
}