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Parent(s): 4e6fa5a
Pin MedASR to Dec 22 revision + transformers==4.47.1
Browse files- backend/models/medasr.py +89 -43
- requirements.txt +1 -1
backend/models/medasr.py
CHANGED
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@@ -7,12 +7,9 @@ from pathlib import Path
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import librosa
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try:
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import
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torch = None
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AutoProcessor = None
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AutoModelForCTC = None
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from backend.config import get_settings
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from backend.errors import ModelExecutionError
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@@ -21,54 +18,90 @@ from backend.schemas import Transcript
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class MedASRModel:
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"""Load and run MedASR speech recognition or a deterministic mock implementation.
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def __init__(self, model_manager: ModelManager | None = None) -> None:
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self.settings = get_settings()
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self.model_manager = model_manager or ModelManager()
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self.
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self._processor = None
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self._device = "cpu"
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@property
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def is_mock_mode(self) -> bool:
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return self.settings.MEDASR_MODEL_ID.lower() == "mock"
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def load_model(self) -> None:
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if self.is_mock_mode:
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self.
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self.model_manager.register_model("medasr", self.
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return
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if self.
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return
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if
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raise ModelExecutionError("transformers is required for non-mock MedASR mode")
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device = "cuda:0"
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if self.model_manager.check_gpu()["vram_total_bytes"] == 0:
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device = "cpu"
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model_id = self.settings.MEDASR_MODEL_ID
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try:
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self.
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except Exception as exc:
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raise ModelExecutionError(f"Failed to load MedASR model: {exc}") from exc
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self.model_manager.register_model("medasr", self.
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def transcribe(self, audio_path: str) -> Transcript:
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source = Path(audio_path)
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if not source.exists():
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raise ModelExecutionError(f"Audio path not found: {source}")
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if self.
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self.load_model()
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if self.is_mock_mode:
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duration_s = float(librosa.get_duration(y=waveform, sr=16000))
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try:
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waveform,
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)
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inputs = inputs.to(self._device)
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with torch.no_grad():
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outputs = self._model.generate(**inputs)
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transcript_text = self._processor.batch_decode(outputs, skip_special_tokens=True)[0]
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# Clean up special tokens that may remain
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import re
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transcript_text = transcript_text.replace("<epsilon>", "")
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transcript_text = transcript_text.replace("</s>", "").replace("<s>", "")
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transcript_text = re.sub(r'\s+', ' ', transcript_text).strip()
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except Exception as exc:
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raise ModelExecutionError(f"MedASR inference failed: {exc}") from exc
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return self._make_transcript(source, transcript_text, duration_s)
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def _make_transcript(self, audio_path: Path, text: str, duration_s: float) -> Transcript:
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now = datetime.now(tz=timezone.utc).isoformat()
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consultation_id = audio_path.stem
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return Transcript(
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@staticmethod
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def _duration(audio_path: Path) -> float:
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waveform, sample_rate = librosa.load(audio_path, sr=16000, mono=True)
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return float(librosa.get_duration(y=waveform, sr=sample_rate))
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@staticmethod
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def _get_mock_text(audio_path: Path) -> str:
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transcript_map = {
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"mrs_thompson": Path("data/demo/mrs_thompson_transcript.txt"),
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"mr_okafor": Path("data/demo/mr_okafor_transcript.txt"),
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"ms_patel": Path("data/demo/ms_patel_transcript.txt"),
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"mr_williams": Path("data/demo/mr_williams_transcript.txt"),
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"mrs_khan": Path("data/demo/mrs_khan_transcript.txt"),
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}
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for key, transcript_path in transcript_map.items():
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if key in audio_path.stem:
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return transcript_path.read_text(encoding="utf-8").strip()
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return "Mock transcript placeholder for non-demo audio input."
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import librosa
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try:
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from transformers import pipeline
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except ModuleNotFoundError: # pragma: no cover - mock mode support
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pipeline = None
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from backend.config import get_settings
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from backend.errors import ModelExecutionError
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class MedASRModel:
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"""Load and run MedASR speech recognition or a deterministic mock implementation.
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Args:
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model_manager (ModelManager | None): Optional shared model registry manager.
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Returns:
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None: Initialised model wrapper with lazy-loaded pipeline.
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"""
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def __init__(self, model_manager: ModelManager | None = None) -> None:
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"""Initialise MedASR wrapper.
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Args:
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model_manager (ModelManager | None): Optional model manager instance.
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Returns:
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None: Sets internal settings and model state.
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"""
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self.settings = get_settings()
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self.model_manager = model_manager or ModelManager()
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self._pipeline = None
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@property
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def is_mock_mode(self) -> bool:
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"""Return whether MedASR should operate in deterministic mock mode.
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Args:
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None: Reads current settings.
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Returns:
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bool: True when configured model id is "mock".
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"""
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return self.settings.MEDASR_MODEL_ID.lower() == "mock"
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def load_model(self) -> None:
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"""Load the MedASR transformer pipeline unless running in mock mode.
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Args:
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None: Uses settings for model id and device selection.
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Returns:
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None: Caches loaded pipeline instance.
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"""
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if self.is_mock_mode:
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self._pipeline = "mock"
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self.model_manager.register_model("medasr", self._pipeline)
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return
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if self._pipeline is not None:
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return
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if pipeline is None:
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raise ModelExecutionError("transformers is required for non-mock MedASR mode")
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device = "cuda:0"
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if self.model_manager.check_gpu()["vram_total_bytes"] == 0:
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device = "cpu"
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try:
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self._pipeline = pipeline(
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"automatic-speech-recognition",
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model=self.settings.MEDASR_MODEL_ID,
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revision="2625be4f1377ac544b451c6938eaf955c19a9c38",
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device=device,
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)
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except Exception as exc:
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raise ModelExecutionError(f"Failed to load MedASR model: {exc}") from exc
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self.model_manager.register_model("medasr", self._pipeline)
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def transcribe(self, audio_path: str) -> Transcript:
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"""Transcribe audio input into a Transcript schema object.
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Args:
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audio_path (str): Path to 16kHz mono audio WAV.
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Returns:
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Transcript: Structured transcript result.
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"""
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source = Path(audio_path)
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if not source.exists():
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raise ModelExecutionError(f"Audio path not found: {source}")
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if self._pipeline is None:
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self.load_model()
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if self.is_mock_mode:
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duration_s = float(librosa.get_duration(y=waveform, sr=16000))
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try:
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result = self._pipeline(
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waveform,
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chunk_length_s=20,
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stride_length_s=(4, 2),
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return_timestamps=True,
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generate_kwargs={"language": "en", "task": "transcribe"},
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)
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except Exception as exc:
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raise ModelExecutionError(f"MedASR inference failed: {exc}") from exc
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transcript_text = str(result.get("text", "")).strip()
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return self._make_transcript(source, transcript_text, duration_s)
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def _make_transcript(self, audio_path: Path, text: str, duration_s: float) -> Transcript:
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"""Build a Transcript object from model output values.
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Args:
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audio_path (Path): Source audio path.
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text (str): Transcript text.
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duration_s (float): Audio duration seconds.
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Returns:
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Transcript: Pydantic transcript model.
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"""
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now = datetime.now(tz=timezone.utc).isoformat()
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consultation_id = audio_path.stem
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return Transcript(
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@staticmethod
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def _duration(audio_path: Path) -> float:
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"""Compute audio duration in seconds using librosa.
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Args:
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audio_path (Path): Audio file path.
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Returns:
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float: Duration in seconds.
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"""
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waveform, sample_rate = librosa.load(audio_path, sr=16000, mono=True)
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return float(librosa.get_duration(y=waveform, sr=sample_rate))
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@staticmethod
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def _get_mock_text(audio_path: Path) -> str:
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"""Return ground-truth transcript for known demo files in mock mode.
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Args:
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audio_path (Path): Audio file path used for lookup.
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Returns:
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str: Transcript text from fixture file or fallback placeholder.
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"""
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transcript_map = {
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"mrs_thompson": Path("data/demo/mrs_thompson_transcript.txt"),
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"mr_okafor": Path("data/demo/mr_okafor_transcript.txt"),
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"ms_patel": Path("data/demo/ms_patel_transcript.txt"),
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}
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for key, transcript_path in transcript_map.items():
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if key in audio_path.stem:
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return transcript_path.read_text(encoding="utf-8").strip()
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return "Mock transcript placeholder for non-demo audio input."
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requirements.txt
CHANGED
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@@ -1,5 +1,5 @@
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torch==2.4.1
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-
transformers
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bitsandbytes>=0.46.1
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accelerate>=1.2.1
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gradio>=5.10.0
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torch==2.4.1
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transformers==4.47.1
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bitsandbytes>=0.46.1
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accelerate>=1.2.1
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gradio>=5.10.0
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