Instructions to use tdc/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use tdc/Geneformer with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="tdc/Geneformer")# pip install -U transformers accelerate # Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("tdc/Geneformer") model = AutoModelForMaskedLM.from_pretrained("tdc/Geneformer", device_map="auto") - Notebooks
- Google Colab
- Kaggle
Download docs/Makefile from tdc/Geneformer: direct link, hf CLI and curl.
- Browser
- Download file 638 Bytes
-
https://huggingface.co/tdc/Geneformer/resolve/1b531a57070efd45ef2d73f0e399f5ab40e5a3ea/docs/Makefile
- Command line
-
hf download hf://tdc/Geneformer@1b531a57070efd45ef2d73f0e399f5ab40e5a3ea/docs/Makefile
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curl -L -o Makefile https://huggingface.co/tdc/Geneformer/resolve/1b531a57070efd45ef2d73f0e399f5ab40e5a3ea/docs/Makefile
638 Bytes
| # Minimal makefile for Sphinx documentation | |
| # | |
| # You can set these variables from the command line, and also | |
| # from the environment for the first two. | |
| SPHINXOPTS ?= | |
| SPHINXBUILD ?= sphinx-build | |
| SOURCEDIR = source | |
| BUILDDIR = build | |
| # Put it first so that "make" without argument is like "make help". | |
| help: | |
| @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) | |
| # Catch-all target: route all unknown targets to Sphinx using the new | |
| # "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). | |
| %: Makefile | |
| @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) | |