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tdc
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files Files and versions
xet
Community

Instructions to use tdc/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use tdc/Geneformer with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="tdc/Geneformer")
    # pip install -U transformers accelerate
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("tdc/Geneformer")
    model = AutoModelForMaskedLM.from_pretrained("tdc/Geneformer", device_map="auto")
  • Notebooks
  • Google Colab
  • Kaggle
Geneformer / geneformer
421 kB
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  • 2 contributors
History: 1 commit
Alejandro Velez
tdc geneformer
47990ca over 1 year ago
  • mtl
    tdc geneformer over 1 year ago
  • __init__.py
    1.22 kB
    tdc geneformer over 1 year ago
  • classifier.py
    64.7 kB
    tdc geneformer over 1 year ago
  • classifier_utils.py
    23.3 kB
    tdc geneformer over 1 year ago
  • collator_for_classification.py
    31.2 kB
    tdc geneformer over 1 year ago
  • emb_extractor.py
    32.3 kB
    tdc geneformer over 1 year ago
  • evaluation_utils.py
    9.76 kB
    tdc geneformer over 1 year ago
  • in_silico_perturber.py
    66.4 kB
    tdc geneformer over 1 year ago
  • in_silico_perturber_stats.py
    45.1 kB
    tdc geneformer over 1 year ago
  • mtl_classifier.py
    13.7 kB
    tdc geneformer over 1 year ago
  • perturber_utils.py
    32.4 kB
    tdc geneformer over 1 year ago
  • pretrainer.py
    29.5 kB
    tdc geneformer over 1 year ago
  • tokenizer.py
    29.5 kB
    tdc geneformer over 1 year ago