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tdc
/
Geneformer

Fill-Mask
Transformers
Safetensors
bert
single-cell
genomics
Model card Files Files and versions
xet
Community

Instructions to use tdc/Geneformer with libraries, inference providers, notebooks, and local apps. Follow these links to get started.

  • Libraries
  • Transformers

    How to use tdc/Geneformer with Transformers:

    # Use a pipeline as a high-level helper
    from transformers import pipeline
    
    pipe = pipeline("fill-mask", model="tdc/Geneformer")
    # pip install -U transformers accelerate
    # Load model directly
    from transformers import AutoTokenizer, AutoModelForMaskedLM
    
    tokenizer = AutoTokenizer.from_pretrained("tdc/Geneformer")
    model = AutoModelForMaskedLM.from_pretrained("tdc/Geneformer", device_map="auto")
  • Notebooks
  • Google Colab
  • Kaggle
Geneformer / geneformer /mtl
42.1 kB
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  • 2 contributors
History: 1 commit
Alejandro Velez
tdc geneformer
47990ca almost 2 years ago
  • __init__.py
    18 Bytes
    tdc geneformer almost 2 years ago
  • collators.py
    2.86 kB
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  • data.py
    6.26 kB
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  • eval_utils.py
    3.71 kB
    tdc geneformer almost 2 years ago
  • imports.py
    1.15 kB
    tdc geneformer almost 2 years ago
  • model.py
    4.42 kB
    tdc geneformer almost 2 years ago
  • optuna_utils.py
    850 Bytes
    tdc geneformer almost 2 years ago
  • train.py
    12.8 kB
    tdc geneformer almost 2 years ago
  • train_utils.py
    5.45 kB
    tdc geneformer almost 2 years ago
  • utils.py
    4.6 kB
    tdc geneformer almost 2 years ago