Fill-Mask
Transformers
PyTorch
Safetensors
English
modernbert
masked-lm
long-context
BioClinical-ModernBERT
clinical
biomedical
clinical encoder
clinical modern bert
Instructions to use thomas-sounack/BioClinical-ModernBERT-large with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use thomas-sounack/BioClinical-ModernBERT-large with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("fill-mask", model="thomas-sounack/BioClinical-ModernBERT-large")# Load model directly from transformers import AutoTokenizer, AutoModelForMaskedLM tokenizer = AutoTokenizer.from_pretrained("thomas-sounack/BioClinical-ModernBERT-large") model = AutoModelForMaskedLM.from_pretrained("thomas-sounack/BioClinical-ModernBERT-large", device_map="auto") - Inference
- Notebooks
- Google Colab
- Kaggle
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README.md
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primaryClass={cs.CL},
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url={https://arxiv.org/abs/2506.10896},
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```
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primaryClass={cs.CL},
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url={https://arxiv.org/abs/2506.10896},
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}
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```
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*This project was a collaboration between members of the Dana-Farber Cancer Institute, LightOn, MIT, OpenEvidence and Microsoft.*
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